Wall clock time and date at job start Mon Mar 30 2020 17:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 117.00161 * 2 1 4 4 C 1.38756 * 120.47529 * 359.97438 * 3 2 1 5 5 N 1.31810 * 120.68164 * 180.02562 * 4 3 2 6 6 C 1.31870 * 121.78396 * 359.72368 * 5 4 3 7 7 C 1.38219 * 120.88619 * 0.54386 * 6 5 4 8 8 C 1.50697 * 120.38605 * 179.75047 * 7 6 5 9 9 N 1.46901 * 109.46943 * 269.71624 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47393 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99765 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00736 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99548 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00627 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47183 * 59.99833 * 16 14 12 18 18 H 1.48504 * 109.47670 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47006 * 300.00098 * 16 14 12 20 20 C 1.38575 * 119.22111 * 359.47351 * 7 6 5 21 21 H 1.09005 * 109.46753 * 299.99635 * 1 2 3 22 22 H 1.08994 * 109.47455 * 59.99970 * 1 2 3 23 23 H 1.09004 * 109.47327 * 180.02562 * 1 2 3 24 24 H 1.08001 * 119.65516 * 359.97438 * 4 3 2 25 25 H 1.08004 * 119.56243 * 180.26785 * 6 5 4 26 26 H 1.09004 * 109.46763 * 149.72066 * 8 7 6 27 27 H 1.08995 * 109.47483 * 29.71723 * 8 7 6 28 28 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 29 29 H 1.09001 * 109.46798 * 300.00327 * 10 9 8 30 30 H 1.08998 * 109.46961 * 60.00043 * 10 9 8 31 31 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 32 32 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 33 33 H 0.97002 * 119.99722 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.81340 * 180.23572 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.3001 2.3808 -0.0005 5 7 1.8943 3.5574 -0.0010 6 6 3.2080 3.6721 0.0043 7 6 4.0180 2.5521 -0.0005 8 6 5.5180 2.6963 0.0001 9 7 6.0060 2.7423 -1.3847 10 6 7.4679 2.8821 -1.4234 11 6 7.9376 2.9270 -2.8787 12 6 9.4373 3.0698 -2.9185 13 1 9.9992 3.1237 -1.9976 14 6 10.0921 3.1317 -4.1302 15 7 9.4080 3.0656 -5.2515 16 14 11.9509 3.3095 -4.1794 17 1 12.5773 2.1519 -3.4919 18 1 12.4070 3.3529 -5.5920 19 1 12.3464 4.5658 -3.4933 20 6 3.4345 1.2952 0.0000 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.2214 2.3268 -0.0014 25 1 3.6571 4.6543 0.0081 26 1 5.9646 1.8454 0.5146 27 1 5.7944 3.6172 0.5134 28 1 5.7072 1.9282 -1.9006 29 1 7.7581 3.8042 -0.9197 30 1 7.9276 2.0324 -0.9188 31 1 7.6474 2.0051 -3.3828 32 1 7.4779 3.7769 -3.3829 33 1 9.8687 3.1088 -6.1040 34 1 4.0429 0.4029 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699779607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:50 Heat of formation + Delta-G solvation = -34.353421 kcal Electronic energy + Delta-G solvation = -15618.587908 eV Core-core repulsion = 12936.499931 eV Total energy + Delta-G solvation = -2682.087977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66201 -39.25618 -37.55891 -35.25824 -33.69144 -32.00746 -30.65859 -28.45408 -27.05566 -25.20445 -24.48384 -22.54883 -22.33325 -18.88240 -18.48204 -18.14596 -17.65731 -16.82742 -16.67065 -16.34795 -15.64432 -15.37286 -15.08988 -14.48575 -14.13993 -14.07092 -14.02389 -13.82705 -13.18796 -12.81967 -12.73779 -12.58362 -12.44322 -12.40296 -11.93840 -11.44413 -11.33132 -10.59033 -10.54481 -10.47606 -9.45502 -9.29806 -8.19213 -6.30957 0.04684 0.25534 1.41680 1.45017 1.52874 2.20666 2.41634 2.70405 3.14336 3.43770 3.55078 3.63932 3.81878 3.98410 4.14249 4.23514 4.39074 4.41821 4.54792 4.57989 4.68517 4.74514 4.80847 4.93644 5.08288 5.22406 5.44763 5.49379 5.67767 5.78410 6.11308 6.21731 6.25113 6.46744 6.86679 6.92304 7.38495 8.92812 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.049634 B = 0.003725 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.994321 B = 7515.368506 C = 7697.070920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.074 3.926 4 C 0.011 3.989 5 N -0.471 5.471 6 C 0.069 3.931 7 C -0.088 4.088 8 C 0.103 3.897 9 N -0.693 5.693 10 C 0.084 3.916 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.063 0.937 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.115 4.115 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.123 0.877 24 H 0.182 0.818 25 H 0.166 0.834 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.025 0.975 31 H -0.010 1.010 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 -5.038 13.137 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.026 3.974 4 C -0.148 4.148 5 N -0.180 5.180 6 C -0.088 4.088 7 C -0.090 4.090 8 C -0.026 4.026 9 N -0.324 5.324 10 C -0.045 4.045 11 C -0.008 4.008 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.142 4.142 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.141 0.859 24 H 0.199 0.801 25 H 0.184 0.816 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.008 0.992 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.106 -3.816 12.895 21.759 hybrid contribution 1.409 -1.435 -0.283 2.031 sum -15.698 -5.251 12.612 20.810 Atomic orbital electron populations 1.23445 0.75880 1.06089 1.02624 1.86071 1.23896 1.25552 1.88415 1.20086 0.93040 0.86335 0.97952 1.23291 1.01664 0.86777 1.03028 1.67576 1.12439 1.27335 1.10667 1.22768 0.88444 0.99471 0.98146 1.20674 0.96986 0.92975 0.98392 1.20852 0.88827 1.02691 0.90183 1.60560 1.12091 1.46889 1.12883 1.21815 0.85430 0.99508 0.97699 1.18930 0.94689 0.95013 0.92120 1.21607 0.93503 1.50401 0.92828 0.91839 1.26002 1.03896 0.94731 0.95261 1.70114 1.37838 1.51320 0.98041 0.85461 0.78950 0.79253 0.77131 1.19043 1.20970 1.19079 1.21042 0.92373 0.98682 1.02076 0.91092 0.91545 0.85910 0.80113 0.81642 0.93102 0.88777 0.84531 0.91648 0.95721 0.99206 0.98811 0.92777 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.82 113.37 1.11 1.26 16 2 O -0.33 -6.56 10.51 -92.45 -0.97 -7.53 16 3 C 0.07 1.69 6.71 22.60 0.15 1.84 16 4 C 0.01 0.24 10.22 84.82 0.87 1.10 16 5 N -0.47 -12.57 10.35 -195.43 -2.02 -14.60 16 6 C 0.07 1.83 10.85 84.68 0.92 2.75 16 7 C -0.09 -2.27 5.41 -19.79 -0.11 -2.37 16 8 C 0.10 2.77 5.84 85.56 0.50 3.27 16 9 N -0.69 -24.16 6.49 -517.93 -3.36 -27.52 16 10 C 0.08 3.44 5.62 86.30 0.49 3.93 16 11 C 0.03 1.60 5.23 29.85 0.16 1.76 16 12 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 16 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 C -0.11 -2.81 9.81 22.56 0.22 -2.59 16 21 H 0.07 0.57 7.68 -2.38 -0.02 0.55 16 22 H 0.07 0.61 7.68 -2.39 -0.02 0.59 16 23 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.18 2.82 6.32 -2.91 -0.02 2.80 16 25 H 0.17 3.99 8.06 -2.91 -0.02 3.96 16 26 H 0.05 1.25 8.09 -2.39 -0.02 1.23 16 27 H 0.09 2.33 8.09 -2.39 -0.02 2.32 16 28 H 0.34 11.78 8.72 -89.69 -0.78 11.00 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -68.33 295.05 1.26 -67.06 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.31 Total: 13.01 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 5.00 Total: -19.50 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -5.10 Total: -99.32 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.97 Total: -7.53 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.33 1.26 -67.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699779607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.709 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds