Wall clock time and date at job start Mon Mar 30 2020 17:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46941 * 2 1 4 4 O 1.33657 * 125.79535 * 270.32114 * 3 2 1 5 5 C 1.34215 * 110.90407 * 180.13395 * 4 3 2 6 6 C 1.34179 * 109.12814 * 359.58692 * 5 4 3 7 7 C 1.36408 * 125.80588 * 89.99797 * 3 2 1 8 8 C 1.47383 * 127.19326 * 0.02562 * 7 3 2 9 9 O 1.21618 * 119.99210 * 321.29388 * 8 7 3 10 10 N 1.34775 * 120.00191 * 141.29892 * 8 7 3 11 11 C 1.46493 * 120.00091 * 5.18093 * 10 8 7 12 12 C 1.46503 * 119.99452 * 185.18809 * 10 8 7 13 13 C 1.50697 * 109.47425 * 89.99716 * 12 10 8 14 14 H 1.07997 * 119.99970 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99847 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46932 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46719 * 120.00435 * 17 15 13 20 20 H 1.48499 * 109.47125 * 240.00457 * 17 15 13 21 21 H 1.09002 * 109.46757 * 60.00100 * 1 2 3 22 22 H 1.08995 * 109.46832 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47424 * 300.00703 * 1 2 3 24 24 H 1.08994 * 109.47169 * 239.99666 * 2 1 3 25 25 H 1.09002 * 109.46687 * 119.99115 * 2 1 3 26 26 H 1.08000 * 125.43799 * 179.84722 * 5 4 3 27 27 H 1.07997 * 127.02290 * 180.24296 * 6 5 4 28 28 H 1.08998 * 109.47216 * 84.55358 * 11 10 8 29 29 H 1.09005 * 109.47144 * 204.55471 * 11 10 8 30 30 H 1.09001 * 109.47173 * 324.55294 * 11 10 8 31 31 H 1.09011 * 109.46498 * 209.99633 * 12 10 8 32 32 H 1.09000 * 109.47342 * 329.99238 * 12 10 8 33 33 H 0.96996 * 119.99903 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2872 2.1599 -1.0841 5 6 2.7241 3.3812 -0.7392 6 6 2.7575 3.4746 0.5989 7 6 2.2983 2.1733 1.1063 8 6 2.1551 1.7668 2.5157 9 8 1.2132 1.0773 2.8569 10 7 3.0679 2.1593 3.4263 11 6 4.1383 3.0818 3.0399 12 6 2.9896 1.6633 4.8026 13 6 3.7868 0.3902 4.9238 14 1 4.3008 -0.0092 4.0621 15 6 3.8609 -0.2640 6.1352 16 7 3.2354 0.2227 7.1848 17 14 4.8485 -1.8425 6.2854 18 1 5.4513 -2.1763 4.9699 19 1 5.9260 -1.6584 7.2907 20 1 3.9540 -2.9472 6.7151 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.0003 4.1653 -1.4287 27 1 3.0599 4.3307 1.1837 28 1 3.7753 4.1075 3.1055 29 1 4.9881 2.9536 3.7104 30 1 4.4479 2.8708 2.0163 31 1 3.3956 2.4125 5.4824 32 1 1.9487 1.4660 5.0591 33 1 3.2878 -0.2374 8.0371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234174981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:14 Heat of formation + Delta-G solvation = -48.159420 kcal Electronic energy + Delta-G solvation = -16937.825451 eV Core-core repulsion = 14157.420139 eV Total energy + Delta-G solvation = -2780.405312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.50186 -40.34455 -36.67478 -34.99562 -34.84540 -33.55001 -30.09706 -29.52323 -27.46004 -25.81868 -24.41371 -23.20992 -21.78104 -19.73509 -18.72046 -18.38534 -17.31071 -17.06269 -16.89279 -16.26745 -15.90263 -15.35753 -15.22151 -14.37798 -14.33273 -14.07087 -13.72812 -13.52298 -13.45482 -13.20820 -12.99313 -12.81435 -12.55548 -12.45604 -12.23448 -11.94435 -11.72024 -10.89826 -10.68123 -10.58155 -9.59718 -9.36720 -8.24552 -6.40288 0.50384 1.24113 1.35591 1.37764 1.50037 1.88184 2.10387 2.37577 2.52828 3.04629 3.61730 3.76238 4.01124 4.15025 4.30143 4.40029 4.43245 4.61179 4.63383 4.78198 4.88779 4.92671 4.99956 5.03260 5.11116 5.20720 5.31817 5.45672 5.53928 5.81438 6.02915 6.11939 6.66698 6.73292 7.24205 7.42152 8.82878 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.007074 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.429106 B = 3957.167356 C = 4374.381801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C 0.054 3.946 4 O -0.175 6.175 5 C -0.021 4.021 6 C -0.201 4.201 7 C -0.255 4.255 8 C 0.568 3.432 9 O -0.588 6.588 10 N -0.603 5.603 11 C 0.082 3.918 12 C 0.260 3.740 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.970 3.030 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.279 1.279 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.037 0.963 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.258 0.742 27 H 0.176 0.824 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.025 0.975 32 H 0.001 0.999 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.562 6.170 -17.339 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C 0.001 3.999 4 O -0.072 6.072 5 C -0.086 4.086 6 C -0.220 4.220 7 C -0.260 4.260 8 C 0.358 3.642 9 O -0.470 6.470 10 N -0.334 5.334 11 C -0.060 4.060 12 C 0.139 3.861 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.205 1.205 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.056 0.944 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.274 0.726 27 H 0.193 0.807 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.019 0.981 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.039 5.725 -17.234 18.190 hybrid contribution 0.346 -0.561 1.088 1.272 sum 1.386 5.164 -16.146 17.008 Atomic orbital electron populations 1.21672 0.92742 1.03289 1.01902 1.20212 0.97632 0.86305 1.04159 1.22782 0.98751 0.95119 0.83198 1.83746 1.65463 1.23971 1.33978 1.24759 1.01607 0.85890 0.96352 1.23201 1.06402 0.97075 0.95365 1.21297 1.13683 0.98496 0.92521 1.17868 0.81811 0.79336 0.85181 1.90694 1.33569 1.41196 1.81564 1.47996 1.28178 1.46032 1.11157 1.22029 0.89817 0.92389 1.01753 1.18814 0.95892 0.93842 0.77595 1.21702 1.31426 1.09402 0.95789 0.93017 1.25881 0.96746 1.01351 0.95085 1.70061 1.43839 1.41450 1.01396 0.85336 0.78357 0.78468 0.78464 1.19148 1.19249 1.20475 0.90940 0.90060 0.94383 0.87093 0.91202 0.72599 0.80678 0.90896 0.91333 0.89851 0.95657 0.98113 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.90 71.98 0.71 -3.10 16 2 C -0.05 -1.35 5.93 29.85 0.18 -1.17 16 3 C 0.05 1.70 6.62 25.26 0.17 1.87 16 4 O -0.18 -4.37 10.52 4.42 0.05 -4.32 16 5 C -0.02 -0.40 12.03 66.89 0.80 0.41 16 6 C -0.20 -5.03 8.84 23.65 0.21 -4.82 16 7 C -0.26 -9.11 5.44 -18.99 -0.10 -9.22 16 8 C 0.57 26.51 7.32 86.65 0.63 27.15 16 9 O -0.59 -32.30 15.31 -4.09 -0.06 -32.36 16 10 N -0.60 -27.94 2.86 -855.09 -2.44 -30.38 16 11 C 0.08 2.75 9.10 127.77 1.16 3.91 16 12 C 0.26 14.66 5.18 85.63 0.44 15.10 16 13 C -0.54 -32.34 9.39 25.60 0.24 -32.10 16 14 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 15 C 0.01 0.49 5.46 84.65 0.46 0.96 16 16 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 17 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.04 1.31 7.56 -2.39 -0.02 1.29 16 24 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 25 H 0.07 2.49 7.65 -2.39 -0.02 2.48 16 26 H 0.26 1.85 8.06 -2.91 -0.02 1.83 16 27 H 0.18 3.54 6.66 -2.91 -0.02 3.52 16 28 H 0.07 1.98 7.42 -2.39 -0.02 1.96 16 29 H 0.07 2.33 8.03 -2.38 -0.02 2.31 16 30 H 0.08 2.42 5.92 -2.39 -0.01 2.41 16 31 H 0.03 1.44 8.07 -2.38 -0.02 1.42 16 32 H 0.00 0.05 7.36 -2.39 -0.02 0.03 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -77.09 285.31 5.86 -71.22 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.10 Total: 6.07 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.91 Total: -1.02 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -2.16 Total: -87.03 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.02 Total: -36.68 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.09 5.86 -71.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234174981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.065 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds