Wall clock time and date at job start Mon Mar 30 2020 17:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47271 * 354.10041 * 3 2 1 5 5 C 1.37093 * 120.00225 * 265.90231 * 4 3 2 6 6 H 1.08003 * 119.99902 * 148.84227 * 5 4 3 7 7 C 1.38948 * 119.99992 * 328.84432 * 5 4 3 8 8 N 1.31415 * 120.00120 * 332.94456 * 7 5 4 9 9 Si 1.86804 * 120.00132 * 152.93743 * 7 5 4 10 10 H 1.48501 * 109.47058 * 85.00141 * 9 7 5 11 11 H 1.48502 * 109.47303 * 204.99994 * 9 7 5 12 12 H 1.48497 * 109.46883 * 325.00064 * 9 7 5 13 13 C 1.34782 * 119.99839 * 85.90278 * 4 3 2 14 14 O 1.21289 * 119.99741 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00090 * 359.97438 * 13 4 3 16 16 C 1.53004 * 109.47364 * 179.97438 * 15 13 4 17 17 H 1.08998 * 110.27044 * 54.30347 * 16 15 13 18 18 C 1.54943 * 110.30934 * 176.39245 * 16 15 13 19 19 C 1.55418 * 100.89052 * 155.28935 * 18 16 15 20 20 C 1.54378 * 102.30946 * 325.98921 * 19 18 16 21 21 O 1.43241 * 107.58995 * 21.28814 * 20 19 18 22 22 H 4.40643 * 5.51503 * 180.02562 * 4 1 2 23 23 H 1.09001 * 109.47066 * 114.10165 * 3 2 1 24 24 H 1.09001 * 109.47037 * 234.09790 * 3 2 1 25 25 H 0.97006 * 120.00075 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47456 * 300.00059 * 15 13 4 27 27 H 1.09008 * 109.47120 * 59.99972 * 15 13 4 28 28 H 1.09003 * 111.12259 * 273.27755 * 18 16 15 29 29 H 1.08997 * 111.12828 * 37.44027 * 18 16 15 30 30 H 1.09004 * 110.88118 * 207.74775 * 19 18 16 31 31 H 1.09007 * 110.93531 * 84.25015 * 19 18 16 32 32 H 1.08996 * 109.83395 * 261.77009 * 20 19 18 33 33 H 1.09005 * 109.83028 * 140.79999 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3730 0.1420 5 6 3.4437 -1.8659 1.3834 6 1 3.3147 -2.9172 1.5944 7 6 3.9225 -1.0129 2.3702 8 7 4.5719 0.0796 2.0360 9 14 3.6429 -1.4188 4.1720 10 1 4.7120 -2.3347 4.6448 11 1 3.6733 -0.1680 4.9718 12 1 2.3211 -2.0765 4.3319 13 6 3.2813 -2.1522 -0.9480 14 8 3.6857 -3.2896 -0.8304 15 6 2.9414 -1.6106 -2.3126 16 6 3.1957 -2.6894 -3.3673 17 1 2.6557 -3.6014 -3.1126 18 6 2.7670 -2.1839 -4.7678 19 6 3.6600 -3.0659 -5.6844 20 6 4.9456 -3.2182 -4.8434 21 8 4.6027 -2.9573 -3.4774 22 1 -1.0499 -0.0005 -0.0001 23 1 3.0091 0.4205 -0.9381 24 1 3.0090 0.6035 0.8324 25 1 4.9065 0.6749 2.7249 26 1 1.8914 -1.3189 -2.3366 27 1 3.5648 -0.7419 -2.5243 28 1 1.7087 -2.3741 -4.9471 29 1 3.0008 -1.1266 -4.8924 30 1 3.8702 -2.5589 -6.6262 31 1 3.1962 -4.0360 -5.8632 32 1 5.6947 -2.5016 -5.1800 33 1 5.3328 -4.2326 -4.9402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281532860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:39 Heat of formation + Delta-G solvation = -20.530781 kcal Electronic energy + Delta-G solvation = -16914.504407 eV Core-core repulsion = 14135.297162 eV Total energy + Delta-G solvation = -2779.207245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36615 -38.10983 -35.04706 -32.61649 -31.96876 -31.34471 -30.99234 -26.89541 -26.21375 -24.22116 -21.62613 -21.08312 -18.86130 -18.00370 -16.66894 -16.55536 -15.92867 -15.30062 -14.88928 -14.64301 -14.09080 -13.90859 -13.29903 -12.88468 -12.65322 -12.25831 -11.98574 -11.62649 -11.55252 -11.45497 -11.03289 -10.92593 -10.76910 -10.66419 -10.58532 -10.30716 -9.74834 -9.51540 -9.08121 -8.88963 -8.32241 -7.59243 -6.36004 -3.88702 3.19809 3.28430 3.33669 3.40691 3.52096 3.93135 4.18008 4.21515 4.62073 4.77714 4.91035 4.99633 5.17110 5.29435 5.42110 5.45358 5.63901 5.74753 5.82130 5.89952 5.92905 6.02134 6.12164 6.17968 6.36249 6.51689 6.65307 6.96887 7.49493 7.62119 8.19965 8.30911 8.50903 9.21403 9.41228 10.02881 10.69875 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.007020 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.812275 B = 3987.889456 C = 4503.411432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.162 4.162 3 C 0.195 3.805 4 N -0.444 5.444 5 C -0.308 4.308 6 H 0.095 0.905 7 C 0.035 3.965 8 N -0.867 5.867 9 Si 0.914 3.086 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.467 3.533 14 O -0.563 6.563 15 C -0.137 4.137 16 C 0.103 3.897 17 H 0.074 0.926 18 C -0.154 4.154 19 C -0.155 4.155 20 C 0.047 3.953 21 O -0.359 6.359 22 H 0.208 0.792 23 H 0.076 0.924 24 H 0.135 0.865 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.817 1.147 -11.312 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.164 4.164 3 C 0.071 3.929 4 N -0.164 5.164 5 C -0.435 4.435 6 H 0.112 0.888 7 C -0.169 4.169 8 N -0.505 5.505 9 Si 0.740 3.260 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.256 3.744 14 O -0.445 6.445 15 C -0.177 4.177 16 C 0.046 3.954 17 H 0.092 0.908 18 C -0.192 4.192 19 C -0.193 4.193 20 C -0.030 4.030 21 O -0.278 6.278 22 H 0.225 0.775 23 H 0.094 0.906 24 H 0.152 0.848 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.328 0.713 -10.967 11.811 hybrid contribution -0.500 0.089 0.675 0.845 sum -4.828 0.802 -10.291 11.396 Atomic orbital electron populations 1.24654 0.95660 1.02185 1.04345 1.24474 0.95532 0.98700 0.97692 1.18725 0.81620 0.88116 1.04399 1.43422 1.56315 1.10638 1.06019 1.19428 1.42095 0.96020 0.85958 0.88755 1.25260 0.94510 0.96612 1.00511 1.69957 1.31637 1.14548 1.34399 0.86155 0.79314 0.77938 0.82596 1.20129 1.20793 1.19521 1.20157 0.81819 0.87361 0.85105 1.90544 1.48854 1.19055 1.86024 1.21816 1.02398 0.99083 0.94444 1.22648 0.82681 0.97261 0.92850 0.90822 1.23378 1.00366 1.00456 0.94997 1.23116 0.96433 1.00593 0.99120 1.23081 0.96542 1.00443 0.82931 1.88640 1.23835 1.91279 1.24024 0.77477 0.90607 0.84762 0.92112 0.89322 0.89443 0.90088 0.90332 0.90463 0.90783 0.91867 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.42 19.25 29.55 0.57 -3.85 16 2 C -0.16 -3.33 13.13 -37.12 -0.49 -3.82 16 3 C 0.20 4.39 5.25 -6.83 -0.04 4.35 16 4 N -0.44 -11.62 2.53 -117.94 -0.30 -11.92 16 5 C -0.31 -8.79 9.00 -14.94 -0.13 -8.93 16 6 H 0.09 2.84 7.68 -52.48 -0.40 2.43 16 7 C 0.03 0.94 4.83 -17.47 -0.08 0.85 16 8 N -0.87 -23.49 11.44 55.50 0.64 -22.86 16 9 Si 0.91 20.99 29.63 -169.99 -5.04 15.96 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.47 11.87 7.50 -10.99 -0.08 11.79 16 14 O -0.56 -16.38 15.35 -4.39 -0.07 -16.45 16 15 C -0.14 -2.63 4.03 -27.88 -0.11 -2.74 16 16 C 0.10 1.82 2.91 -25.70 -0.07 1.75 16 17 H 0.07 1.39 7.95 -51.93 -0.41 0.97 16 18 C -0.15 -1.93 6.58 -24.42 -0.16 -2.09 16 19 C -0.15 -1.74 7.02 -24.73 -0.17 -1.91 16 20 C 0.05 0.67 7.80 37.88 0.30 0.96 16 21 O -0.36 -7.10 10.50 -45.17 -0.47 -7.57 16 22 H 0.21 2.75 7.80 -54.10 -0.42 2.32 16 23 H 0.08 1.50 6.61 -51.93 -0.34 1.16 16 24 H 0.14 3.29 5.33 -51.93 -0.28 3.01 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.09 1.51 7.63 -51.93 -0.40 1.11 16 27 H 0.09 1.59 7.41 -51.92 -0.38 1.20 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -33.06 285.56 -5.73 -38.78 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.31 Total: 3.41 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.48 Total: -3.65 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.34 Total: -34.78 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.54 Total: -24.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.96 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.06 -5.73 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281532860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.253 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds