Wall clock time and date at job start Mon Mar 30 2020 17:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 C 1.50695 * 109.52250 * 182.44136 * 7 6 5 9 9 O 1.21212 * 119.99587 * 119.68725 * 8 7 6 10 10 O 1.34312 * 120.00445 * 299.68499 * 8 7 6 11 11 C 1.34915 * 117.00103 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00562 * 359.97438 * 11 10 8 13 13 C 1.38754 * 120.00158 * 180.02562 * 11 10 8 14 14 N 1.31443 * 119.99586 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00587 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47151 * 89.99615 * 15 13 11 17 17 H 1.48500 * 109.47496 * 209.99954 * 15 13 11 18 18 H 1.48505 * 109.46548 * 329.99696 * 15 13 11 19 19 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 20 20 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 21 21 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 23 23 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 24 24 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 25 25 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 26 26 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 27 27 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 28 28 H 1.09007 * 109.57302 * 62.28363 * 7 6 5 29 29 H 0.97005 * 120.00052 * 180.02562 * 14 13 11 30 30 H 1.09002 * 109.50021 * 297.71564 * 19 7 6 31 31 H 1.09001 * 109.50518 * 177.59261 * 19 7 6 32 32 H 1.08998 * 109.46877 * 305.85973 * 20 4 3 33 33 H 1.09002 * 109.46171 * 65.83843 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 6 5.0693 0.4382 5.1337 9 8 5.5748 -0.6152 5.4562 10 8 4.8533 1.3897 6.0566 11 6 5.2225 1.1093 7.3236 12 1 5.6692 0.1541 7.5571 13 6 5.0274 2.0476 8.3270 14 7 4.4833 3.2099 8.0430 15 14 5.5379 1.6591 10.0814 16 1 6.9432 2.0891 10.2947 17 1 4.6500 2.3821 11.0270 18 1 5.4263 0.1971 10.3170 19 6 5.0337 -0.5522 2.8587 20 6 4.5841 -0.3245 1.4136 21 1 -1.0500 -0.0002 0.0001 22 1 3.0089 0.9209 -0.4579 23 1 3.0097 -0.8557 -0.5679 24 1 3.3093 1.9796 1.7282 25 1 1.7057 1.2893 2.0741 26 1 2.6373 0.0861 4.0267 27 1 2.9267 1.8373 4.1689 28 1 5.2240 1.5462 3.3156 29 1 4.3472 3.8661 8.7443 30 1 4.5240 -1.4258 3.2650 31 1 6.1113 -0.7146 2.8832 32 1 4.8193 -1.2059 0.8170 33 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490672074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:54 Heat of formation + Delta-G solvation = -28.383512 kcal Electronic energy + Delta-G solvation = -16544.547957 eV Core-core repulsion = 13765.000192 eV Total energy + Delta-G solvation = -2779.547765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59357 -38.30414 -35.34378 -34.22968 -32.21356 -31.94152 -30.62485 -27.49951 -25.38836 -23.50761 -22.94637 -20.52805 -19.15015 -18.19269 -17.66041 -16.60458 -15.90177 -15.21008 -14.86769 -14.65262 -14.36043 -14.28418 -13.56666 -13.27921 -12.92804 -12.68098 -12.40172 -11.90925 -11.61815 -11.16840 -11.07248 -10.92698 -10.60963 -10.43408 -10.40302 -10.29782 -10.22708 -10.09285 -9.70861 -8.87616 -8.53319 -8.37432 -6.36879 -4.04284 2.63747 2.78481 3.14175 3.21386 3.27558 3.58806 3.97917 4.02470 4.33630 4.56258 4.96278 5.03967 5.16653 5.20759 5.28794 5.43069 5.45856 5.55249 5.75427 5.81027 5.83094 5.88561 5.97713 6.18786 6.32467 6.55537 6.67277 6.91632 7.00775 7.08745 7.44390 7.56070 8.00551 8.77684 9.12481 9.92580 10.81340 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043936 B = 0.005148 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.135017 B = 5437.496729 C = 5827.848281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.161 3.839 4 N -0.538 5.538 5 C 0.059 3.941 6 C -0.105 4.105 7 C -0.071 4.071 8 C 0.403 3.597 9 O -0.556 6.556 10 O -0.214 6.214 11 C -0.382 4.382 12 H 0.094 0.906 13 C 0.042 3.958 14 N -0.867 5.867 15 Si 0.941 3.059 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.096 4.096 20 C 0.059 3.941 21 H 0.216 0.784 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.268 0.732 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 -2.934 -14.403 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.177 4.177 3 C 0.035 3.965 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.143 4.143 7 C -0.090 4.090 8 C 0.249 3.751 9 O -0.454 6.454 10 O -0.121 6.121 11 C -0.458 4.458 12 H 0.112 0.888 13 C -0.162 4.162 14 N -0.504 5.504 15 Si 0.766 3.234 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.134 4.134 20 C -0.068 4.068 21 H 0.233 0.767 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.056 -3.388 -13.960 14.927 hybrid contribution 0.423 0.579 0.508 0.879 sum -3.633 -2.808 -13.452 14.215 Atomic orbital electron populations 1.24872 0.95884 1.01542 0.99784 1.22871 0.94233 0.99964 1.00592 1.18993 0.85192 1.01667 0.90696 1.61916 1.14489 1.38776 1.11085 1.22152 1.00898 0.89762 0.94057 1.21551 0.93936 1.03741 0.95108 1.20813 0.97766 0.99769 0.90682 1.23129 0.79914 0.83468 0.88576 1.90541 1.44957 1.27731 1.82124 1.83876 1.69225 1.40950 1.18093 1.21212 1.41133 1.03077 0.80377 0.88832 1.25308 0.96405 0.94734 0.99745 1.69993 1.40795 1.05738 1.33895 0.85703 0.78488 0.78911 0.80277 1.19951 1.20366 1.19130 1.21418 1.01564 0.97966 0.92459 1.22136 0.86190 1.00520 0.97973 0.76693 0.92549 0.88566 0.94498 0.90468 0.90774 0.89632 0.89221 0.92185 0.90189 0.90689 0.90315 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 19.25 29.55 0.57 -1.58 16 2 C -0.18 -2.08 12.34 -37.12 -0.46 -2.54 16 3 C 0.16 1.72 5.46 -6.61 -0.04 1.69 16 4 N -0.54 -7.04 4.63 -238.18 -1.10 -8.14 16 5 C 0.06 0.82 5.30 -3.83 -0.02 0.80 16 6 C -0.11 -1.81 5.31 -26.65 -0.14 -1.95 16 7 C -0.07 -1.32 2.70 -91.65 -0.25 -1.57 16 8 C 0.40 10.10 7.20 36.00 0.26 10.36 16 9 O -0.56 -15.20 15.21 -19.05 -0.29 -15.49 16 10 O -0.21 -6.21 9.68 -20.69 -0.20 -6.41 16 11 C -0.38 -11.48 9.65 30.92 0.30 -11.18 16 12 H 0.09 2.84 6.86 -52.49 -0.36 2.48 16 13 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 14 N -0.87 -25.63 13.67 55.48 0.76 -24.87 16 15 Si 0.94 21.61 29.55 -169.99 -5.02 16.59 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.10 -1.53 4.68 -26.65 -0.12 -1.66 16 20 C 0.06 0.73 5.46 -3.84 -0.02 0.71 16 21 H 0.22 1.54 7.80 -54.09 -0.42 1.12 16 22 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 23 H 0.10 0.86 7.99 -51.93 -0.41 0.45 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.05 7.11 -51.93 -0.37 0.68 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 288.00 15.07 4.34 4.34 Total: -1.00 -33.68 288.00 -6.03 -39.71 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.49 Total: 0.10 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.02 Total: -5.83 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: -0.35 Total: -33.01 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.49 Total: -21.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.68 -6.03 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490672074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.331 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds