Wall clock time and date at job start Mon Mar 30 2020 17:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39667 * 126.06932 * 2 1 4 4 C 1.38409 * 105.36117 * 179.97438 * 3 2 1 5 5 C 1.47156 * 126.88437 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00156 * 348.70771 * 5 4 3 7 7 N 1.34779 * 119.99854 * 168.71020 * 5 4 3 8 8 C 1.46503 * 120.00042 * 0.56974 * 7 5 4 9 9 C 1.46503 * 119.99936 * 180.56841 * 7 5 4 10 10 H 1.08994 * 109.47048 * 0.02562 * 9 7 5 11 11 C 1.53009 * 109.46849 * 120.00032 * 9 7 5 12 12 C 1.50700 * 109.47060 * 239.99770 * 9 7 5 13 13 H 1.07998 * 120.00145 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99642 * 180.02562 * 12 9 7 15 15 N 1.31516 * 120.00463 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99849 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47066 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47286 * 120.00038 * 16 14 12 19 19 H 1.48501 * 109.47094 * 240.00257 * 16 14 12 20 20 N 1.36600 * 106.22613 * 0.25738 * 4 3 2 21 21 H 0.97002 * 125.18539 * 179.73356 * 20 4 3 22 22 N 1.28438 * 109.62372 * 359.55827 * 20 4 3 23 23 H 1.09003 * 109.47088 * 90.00532 * 1 2 3 24 24 H 1.09002 * 109.47606 * 210.00117 * 1 2 3 25 25 H 1.08995 * 109.47515 * 330.00954 * 1 2 3 26 26 H 1.08001 * 127.32198 * 359.97377 * 3 2 1 27 27 H 1.08997 * 109.47329 * 83.44523 * 8 7 5 28 28 H 1.09001 * 109.46966 * 323.45000 * 8 7 5 29 29 H 1.08995 * 109.47420 * 203.44650 * 8 7 5 30 30 H 1.08997 * 109.46712 * 59.99916 * 11 9 7 31 31 H 1.08998 * 109.46747 * 180.02562 * 11 9 7 32 32 H 1.08998 * 109.47306 * 300.00191 * 11 9 7 33 33 H 0.96995 * 120.00196 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8663 1.4282 0.0003 6 8 4.8262 2.6260 -0.2068 7 7 6.0487 0.8231 0.2295 8 6 6.0983 -0.6218 0.4665 9 6 7.2842 1.6103 0.2415 10 1 7.0499 2.6570 0.0481 11 6 7.9566 1.4830 1.6101 12 6 8.2166 1.0980 -0.8258 13 1 7.9185 0.2693 -1.4509 14 6 9.4502 1.6874 -1.0042 15 7 9.8134 2.6962 -0.2427 16 14 10.6057 1.0529 -2.3278 17 1 9.9658 -0.0811 -3.0415 18 1 10.8996 2.1430 -3.2924 19 1 11.8707 0.5921 -1.7011 20 7 3.5172 -0.7223 -0.0050 21 1 4.2639 -1.3415 -0.0096 22 7 2.2774 -1.0578 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5136 26 1 2.0206 2.1639 -0.0004 27 1 6.1062 -1.1466 -0.4888 28 1 5.2233 -0.9260 1.0409 29 1 7.0023 -0.8678 1.0236 30 1 8.1907 0.4363 1.8039 31 1 8.8756 2.0691 1.6192 32 1 7.2822 1.8535 2.3821 33 1 10.6811 3.1111 -0.3685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:55 Heat of formation + Delta-G solvation = 51.761081 kcal Electronic energy + Delta-G solvation = -16886.587143 eV Core-core repulsion = 14142.807460 eV Total energy + Delta-G solvation = -2743.779683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42039 -38.90034 -35.63879 -33.52528 -32.57430 -30.76544 -29.41037 -27.77244 -26.52182 -25.31942 -23.38199 -20.81379 -20.42542 -19.57979 -17.21148 -16.59462 -15.87919 -15.60344 -15.36773 -14.42144 -14.33997 -13.61570 -13.29130 -12.95384 -12.87711 -12.75340 -12.64459 -12.34368 -11.68338 -11.63577 -11.15798 -10.92202 -10.84876 -10.60189 -10.34541 -10.26853 -9.39045 -9.26327 -8.96765 -8.89546 -8.52564 -7.82373 -6.16168 -4.25073 1.58863 2.68279 3.01201 3.20827 3.29263 3.31569 3.67347 3.72649 4.32233 4.65251 4.83784 5.13323 5.16569 5.18960 5.55203 5.61767 5.62231 5.82438 5.84118 5.95712 6.04121 6.62762 6.65739 6.70153 6.91739 7.06826 7.25071 7.37345 7.60042 7.89288 8.05047 8.13282 8.30434 8.67168 8.83393 9.41852 10.89243 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005954 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.364022 B = 4701.682436 C = 4837.209046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.019 3.981 3 C -0.168 4.168 4 C -0.017 4.017 5 C 0.575 3.425 6 O -0.529 6.529 7 N -0.586 5.586 8 C 0.065 3.935 9 C 0.258 3.742 10 H 0.068 0.932 11 C -0.148 4.148 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.900 3.100 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.283 1.283 20 N -0.385 5.385 21 H 0.447 0.553 22 N -0.288 5.288 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.161 0.839 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.097 0.903 32 H 0.014 0.986 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -7.091 2.257 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 C -0.197 4.197 4 C -0.146 4.146 5 C 0.360 3.640 6 O -0.405 6.405 7 N -0.317 5.317 8 C -0.080 4.080 9 C 0.158 3.842 10 H 0.086 0.914 11 C -0.207 4.207 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 N -0.109 5.109 21 H 0.301 0.699 22 N -0.122 5.122 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.179 0.821 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.115 0.885 32 H 0.033 0.967 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.178 -7.461 2.180 13.615 hybrid contribution 1.233 0.068 -0.720 1.430 sum -9.945 -7.393 1.460 12.477 Atomic orbital electron populations 1.20051 0.86693 1.02949 1.02594 1.22012 0.97060 0.88902 1.05919 1.22006 0.89796 1.00340 1.07545 1.22179 0.97113 0.84295 1.10972 1.17069 0.81668 0.86777 0.78532 1.90794 1.85838 1.13781 1.50112 1.48230 1.07984 1.07854 1.67654 1.21928 1.02682 0.82845 1.00518 1.19076 0.78158 0.92933 0.94009 0.91433 1.22121 1.02426 1.00153 0.95976 1.21311 1.00418 1.17744 1.17324 0.92203 1.24889 0.97820 0.94732 0.96227 1.69878 1.21412 1.22533 1.38520 0.86407 0.80476 0.78830 0.81488 1.19844 1.20799 1.20864 1.44856 1.06533 1.06079 1.53421 0.69943 1.73005 0.90340 1.27922 1.20955 0.90990 0.91200 0.90656 0.82127 0.92707 0.92969 0.88760 0.95042 0.88487 0.96739 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.45 36.00 0.38 -0.25 16 2 C 0.02 0.27 7.22 -82.47 -0.60 -0.32 16 3 C -0.17 -2.67 10.80 -38.98 -0.42 -3.09 16 4 C -0.02 -0.29 6.71 -82.06 -0.55 -0.84 16 5 C 0.57 12.24 7.66 -12.64 -0.10 12.14 16 6 O -0.53 -13.17 16.26 5.26 0.09 -13.08 16 7 N -0.59 -12.24 2.75 -176.63 -0.49 -12.73 16 8 C 0.06 1.02 8.10 59.85 0.48 1.50 16 9 C 0.26 6.41 2.63 -69.08 -0.18 6.22 16 10 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 11 C -0.15 -3.42 8.96 37.16 0.33 -3.09 16 12 C -0.53 -13.91 8.37 -34.44 -0.29 -14.20 16 13 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 14 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 16 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 N -0.39 -5.80 5.93 33.48 0.20 -5.60 16 21 H 0.45 5.68 5.03 -190.46 -0.96 4.72 16 22 N -0.29 -4.34 12.14 33.64 0.41 -3.93 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.05 0.78 7.71 -51.93 -0.40 0.38 16 28 H 0.05 0.68 5.29 -51.93 -0.27 0.41 16 29 H 0.09 1.47 6.45 -51.93 -0.33 1.14 16 30 H 0.03 0.66 6.67 -51.93 -0.35 0.31 16 31 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -31.03 276.16 -5.70 -36.73 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.64 Total: 2.96 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.03 Total: -0.26 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.75 Total: -46.08 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.03 -5.70 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.493 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds