Wall clock time and date at job start Mon Mar 30 2020 17:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39667 * 126.06932 * 2 1 4 4 C 1.38409 * 105.36117 * 179.97438 * 3 2 1 5 5 C 1.47156 * 126.88437 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00156 * 348.70771 * 5 4 3 7 7 N 1.34779 * 119.99854 * 168.71020 * 5 4 3 8 8 C 1.46503 * 120.00042 * 0.56974 * 7 5 4 9 9 C 1.46503 * 119.99936 * 180.56841 * 7 5 4 10 10 H 1.08994 * 109.47048 * 0.02562 * 9 7 5 11 11 C 1.53009 * 109.46849 * 120.00032 * 9 7 5 12 12 C 1.50700 * 109.47060 * 239.99770 * 9 7 5 13 13 H 1.07998 * 120.00145 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99642 * 180.02562 * 12 9 7 15 15 N 1.31516 * 120.00463 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99849 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47066 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47286 * 120.00038 * 16 14 12 19 19 H 1.48501 * 109.47094 * 240.00257 * 16 14 12 20 20 N 1.36600 * 106.22613 * 0.25738 * 4 3 2 21 21 H 0.97002 * 125.18539 * 179.73356 * 20 4 3 22 22 N 1.28438 * 109.62372 * 359.55827 * 20 4 3 23 23 H 1.09003 * 109.47088 * 90.00532 * 1 2 3 24 24 H 1.09002 * 109.47606 * 210.00117 * 1 2 3 25 25 H 1.08995 * 109.47515 * 330.00954 * 1 2 3 26 26 H 1.08001 * 127.32198 * 359.97377 * 3 2 1 27 27 H 1.08997 * 109.47329 * 83.44523 * 8 7 5 28 28 H 1.09001 * 109.46966 * 323.45000 * 8 7 5 29 29 H 1.08995 * 109.47420 * 203.44650 * 8 7 5 30 30 H 1.08997 * 109.46712 * 59.99916 * 11 9 7 31 31 H 1.08998 * 109.46747 * 180.02562 * 11 9 7 32 32 H 1.08998 * 109.47306 * 300.00191 * 11 9 7 33 33 H 0.96995 * 120.00196 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6395 0.0006 5 6 4.8663 1.4282 0.0003 6 8 4.8262 2.6260 -0.2068 7 7 6.0487 0.8231 0.2295 8 6 6.0983 -0.6218 0.4665 9 6 7.2842 1.6103 0.2415 10 1 7.0499 2.6570 0.0481 11 6 7.9566 1.4830 1.6101 12 6 8.2166 1.0980 -0.8258 13 1 7.9185 0.2693 -1.4509 14 6 9.4502 1.6874 -1.0042 15 7 9.8134 2.6962 -0.2427 16 14 10.6057 1.0529 -2.3278 17 1 9.9658 -0.0811 -3.0415 18 1 10.8996 2.1430 -3.2924 19 1 11.8707 0.5921 -1.7011 20 7 3.5172 -0.7223 -0.0050 21 1 4.2639 -1.3415 -0.0096 22 7 2.2774 -1.0578 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5136 26 1 2.0206 2.1639 -0.0004 27 1 6.1062 -1.1466 -0.4888 28 1 5.2233 -0.9260 1.0409 29 1 7.0023 -0.8678 1.0236 30 1 8.1907 0.4363 1.8039 31 1 8.8756 2.0691 1.6192 32 1 7.2822 1.8535 2.3821 33 1 10.6811 3.1111 -0.3685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441322.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:55 Heat of formation + Delta-G solvation = 30.837645 kcal Electronic energy + Delta-G solvation = -16887.494451 eV Core-core repulsion = 14142.807460 eV Total energy + Delta-G solvation = -2744.686991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.65041 -40.56524 -37.39362 -35.17230 -33.95887 -32.25437 -31.01449 -28.90641 -27.85798 -27.33633 -24.95243 -22.34557 -21.64694 -21.09357 -18.73087 -18.46894 -17.52535 -17.03143 -16.89000 -16.18954 -15.81964 -15.00395 -14.75662 -14.50244 -14.23997 -13.95745 -13.68269 -13.55570 -13.23330 -13.07414 -12.99309 -12.78314 -12.67446 -12.23515 -12.15731 -11.78462 -11.24455 -11.05450 -10.56392 -10.23415 -10.08249 -9.52322 -8.18181 -6.35081 0.20546 1.40385 1.42673 1.52387 1.53464 1.76513 2.11695 2.19043 2.42814 3.10523 3.37362 3.64152 3.94789 4.10462 4.37186 4.38242 4.59503 4.74281 4.83213 4.86026 4.93817 4.97793 5.01088 5.12934 5.38411 5.46432 5.56887 5.60035 5.92792 5.99132 6.08901 6.54916 6.71045 6.94088 7.09962 7.37052 8.86722 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.005954 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.364022 B = 4701.682436 C = 4837.209046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.023 3.977 3 C -0.169 4.169 4 C -0.038 4.038 5 C 0.570 3.430 6 O -0.580 6.580 7 N -0.591 5.591 8 C 0.059 3.941 9 C 0.261 3.739 10 H 0.015 0.985 11 C -0.135 4.135 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.375 5.375 21 H 0.455 0.545 22 N -0.287 5.287 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.167 0.833 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -9.264 2.018 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.198 4.198 4 C -0.167 4.167 5 C 0.357 3.643 6 O -0.460 6.460 7 N -0.321 5.321 8 C -0.083 4.083 9 C 0.160 3.840 10 H 0.033 0.967 11 C -0.193 4.193 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.100 5.100 21 H 0.311 0.689 22 N -0.122 5.122 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.185 0.815 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.333 -9.694 1.954 15.808 hybrid contribution 1.499 0.742 -0.633 1.788 sum -10.834 -8.952 1.321 14.116 Atomic orbital electron populations 1.20247 0.83475 1.04518 1.04016 1.22652 0.98918 0.87598 1.04269 1.22305 0.89578 1.01439 1.06515 1.21671 0.95863 0.85344 1.13835 1.17522 0.82738 0.86531 0.77521 1.90753 1.86713 1.16072 1.52431 1.48173 1.06763 1.09778 1.67370 1.22205 1.04300 0.79715 1.02125 1.18697 0.79641 0.90929 0.94741 0.96665 1.21915 1.01162 1.01010 0.95240 1.21554 1.00794 1.17788 1.17762 0.91952 1.25708 0.99420 0.94866 0.98217 1.70014 1.21859 1.23566 1.39923 0.85385 0.78604 0.78175 0.78697 1.18985 1.21235 1.19914 1.44812 1.07017 1.05073 1.53115 0.68938 1.73044 0.90220 1.28184 1.20708 0.89534 0.89938 0.88846 0.81498 0.90886 0.90047 0.88395 0.92932 0.90982 0.95963 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.45 71.24 0.74 -0.28 16 2 C 0.02 0.60 7.22 43.05 0.31 0.91 16 3 C -0.17 -5.15 10.80 22.66 0.24 -4.90 16 4 C -0.04 -1.32 6.71 40.79 0.27 -1.05 16 5 C 0.57 24.69 7.66 86.58 0.66 25.35 16 6 O -0.58 -30.19 16.26 -4.11 -0.07 -30.26 16 7 N -0.59 -24.79 2.75 -830.98 -2.29 -27.07 16 8 C 0.06 1.76 8.10 127.77 1.04 2.80 16 9 C 0.26 13.33 2.63 44.25 0.12 13.44 16 10 H 0.02 0.94 6.90 -2.39 -0.02 0.92 16 11 C -0.13 -6.30 8.96 71.99 0.64 -5.65 16 12 C -0.54 -28.60 8.37 25.60 0.21 -28.39 16 13 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 14 C 0.02 0.96 5.30 84.65 0.45 1.41 16 15 N -0.92 -51.58 11.32 21.45 0.24 -51.34 16 16 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 N -0.37 -10.49 5.93 -48.00 -0.28 -10.77 16 21 H 0.46 10.43 5.03 -220.01 -1.11 9.33 16 22 N -0.29 -7.86 12.14 -47.50 -0.58 -8.44 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.17 4.76 8.06 -2.91 -0.02 4.73 16 27 H 0.07 1.92 7.71 -2.39 -0.02 1.90 16 28 H 0.08 1.94 5.29 -2.39 -0.01 1.93 16 29 H 0.10 2.86 6.45 -2.39 -0.02 2.84 16 30 H 0.05 2.17 6.67 -2.39 -0.02 2.16 16 31 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.50 276.16 3.78 -64.72 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.03 Total: 15.37 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.70 Total: 3.64 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -2.91 Total: -97.62 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.07 Total: -30.26 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.50 3.78 -64.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441322.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.558 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds