Wall clock time and date at job start Mon Mar 30 2020 17:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46824 * 2 1 4 4 N 1.30496 * 125.65380 * 89.97844 * 3 2 1 5 5 C 1.34130 * 109.26014 * 180.02562 * 4 3 2 6 6 C 1.34674 * 108.01710 * 359.97438 * 5 4 3 7 7 N 1.35054 * 125.64688 * 270.28764 * 3 2 1 8 8 C 1.46496 * 126.39961 * 359.97438 * 7 3 2 9 9 C 1.50700 * 109.47139 * 85.14404 * 8 7 3 10 10 O 1.21285 * 119.99755 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99949 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99871 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47431 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00612 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99564 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47495 * 59.99935 * 17 15 13 19 19 H 1.48505 * 109.47324 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47423 * 300.00018 * 17 15 13 21 21 H 1.09003 * 109.46928 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46853 * 300.00185 * 1 2 3 23 23 H 1.09002 * 109.47219 * 59.99971 * 1 2 3 24 24 H 1.08996 * 109.47125 * 239.99853 * 2 1 3 25 25 H 1.09002 * 109.46808 * 119.99372 * 2 1 3 26 26 H 1.07997 * 125.98942 * 179.97438 * 5 4 3 27 27 H 1.08002 * 126.58669 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47200 * 205.15089 * 8 7 3 29 29 H 1.09002 * 109.47024 * 325.14755 * 8 7 3 30 30 H 0.96999 * 119.99907 * 0.02562 * 11 9 8 31 31 H 1.09001 * 109.47322 * 300.00243 * 12 11 9 32 32 H 1.09002 * 109.47266 * 60.00132 * 12 11 9 33 33 H 0.97008 * 120.00246 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2854 2.1381 1.0603 5 6 2.7139 3.3515 0.6818 6 6 2.7273 3.3872 -0.6644 7 7 2.2894 2.1648 -1.0975 8 6 2.1328 1.7412 -2.4911 9 6 0.7063 1.9593 -2.9251 10 8 -0.1001 2.4234 -2.1471 11 7 0.3268 1.6396 -4.1782 12 6 -1.0598 1.8522 -4.6003 13 6 -1.2210 1.4164 -6.0338 14 1 -0.3750 1.0210 -6.5764 15 6 -2.4485 1.5224 -6.6529 16 7 -3.4787 2.0034 -5.9921 17 14 -2.6480 0.9828 -8.4300 18 1 -2.3085 -0.4578 -8.5511 19 1 -4.0537 1.1982 -8.8579 20 1 -1.7405 1.7796 -9.2942 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.9983 4.1583 1.3410 27 1 3.0218 4.2219 -1.2833 28 1 2.7992 2.3256 -3.1255 29 1 2.3818 0.6837 -2.5795 30 1 0.9718 1.2688 -4.8006 31 1 -1.7264 1.2678 -3.9661 32 1 -1.3086 2.9098 -4.5116 33 1 -4.3425 2.0777 -6.4274 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111550895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:06 Heat of formation + Delta-G solvation = -10.021683 kcal Electronic energy + Delta-G solvation = -16587.929748 eV Core-core repulsion = 13841.470963 eV Total energy + Delta-G solvation = -2746.458785 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.09918 -40.42847 -36.23476 -34.98661 -34.63830 -34.34922 -30.26672 -29.51146 -28.06439 -24.85743 -24.52813 -22.37496 -21.83204 -20.57186 -19.13093 -18.18467 -17.73962 -16.88830 -16.62563 -16.18851 -15.59671 -15.54675 -15.15986 -14.54847 -14.42439 -14.28575 -14.12174 -13.99654 -13.22228 -13.15973 -12.95498 -12.68044 -12.46955 -12.25134 -11.98749 -11.52605 -11.33712 -10.97273 -10.80208 -10.40982 -9.89036 -9.26490 -8.29872 -6.46749 1.01360 1.44230 1.47383 1.55725 1.60378 1.77412 2.19985 2.32850 2.56950 3.05782 3.51141 3.75913 3.80302 3.91454 4.09192 4.25414 4.36235 4.48302 4.69235 4.73759 4.90516 5.04965 5.08691 5.21524 5.31362 5.36588 5.44785 5.63968 5.82582 5.86619 6.21237 6.63831 6.81528 7.16318 7.22215 7.40916 8.81900 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044761 B = 0.005099 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.392026 B = 5490.254220 C = 5681.433041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.206 3.794 4 N -0.530 5.530 5 C -0.055 4.055 6 C -0.052 4.052 7 N -0.443 5.443 8 C 0.091 3.909 9 C 0.480 3.520 10 O -0.584 6.584 11 N -0.698 5.698 12 C 0.270 3.730 13 C -0.555 4.555 14 H 0.088 0.912 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.289 1.289 20 H -0.262 1.262 21 H 0.083 0.917 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.186 0.814 27 H 0.200 0.800 28 H 0.160 0.840 29 H 0.155 0.845 30 H 0.413 0.587 31 H -0.013 1.013 32 H -0.015 1.015 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 -3.650 4.142 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.057 4.057 4 N -0.249 5.249 5 C -0.201 4.201 6 C -0.185 4.185 7 N -0.125 5.125 8 C -0.035 4.035 9 C 0.265 3.735 10 O -0.465 6.465 11 N -0.349 5.349 12 C 0.147 3.853 13 C -0.593 4.593 14 H 0.106 0.894 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.215 1.215 20 H -0.186 1.186 21 H 0.102 0.898 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.203 0.797 27 H 0.217 0.783 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.250 0.750 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.255 -3.565 5.331 15.632 hybrid contribution -0.565 0.478 -1.646 1.805 sum 13.691 -3.087 3.685 14.510 Atomic orbital electron populations 1.21723 0.95022 1.02508 1.01155 1.20067 0.95343 0.86475 1.05408 1.23679 1.02949 0.97611 0.81423 1.70160 1.19752 1.05579 1.29447 1.22653 1.07285 0.96383 0.93801 1.23159 1.08216 0.90004 0.97101 1.45015 1.48424 1.12295 1.06733 1.21955 0.93700 1.06947 0.80867 1.21472 0.91375 0.78342 0.82308 1.90737 1.55563 1.46354 1.53823 1.46078 1.13140 1.63149 1.12532 1.18509 0.78237 0.94007 0.94574 1.21598 0.97045 1.44018 0.96643 0.89390 1.26049 0.95129 0.94587 1.03769 1.70133 1.01783 1.45645 1.39544 0.85229 0.77153 0.79368 0.77618 1.18502 1.21479 1.18614 0.89778 0.94031 0.94713 0.88078 0.87550 0.79669 0.78296 0.82211 0.82772 0.75046 0.99471 0.99725 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.89 71.98 0.71 -3.57 16 2 C -0.03 -0.83 6.24 29.85 0.19 -0.65 16 3 C 0.21 6.25 7.15 138.13 0.99 7.24 16 4 N -0.53 -17.86 11.25 -188.12 -2.12 -19.98 16 5 C -0.05 -1.59 11.87 83.52 0.99 -0.60 16 6 C -0.05 -1.38 11.58 83.09 0.96 -0.42 16 7 N -0.44 -12.14 2.24 -518.34 -1.16 -13.30 16 8 C 0.09 1.97 6.37 85.63 0.55 2.52 16 9 C 0.48 16.83 7.56 87.66 0.66 17.50 16 10 O -0.58 -27.36 14.85 -3.04 -0.05 -27.41 16 11 N -0.70 -25.84 5.55 -466.80 -2.59 -28.43 16 12 C 0.27 13.95 5.43 85.63 0.46 14.42 16 13 C -0.56 -28.53 9.28 25.60 0.24 -28.29 16 14 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 15 C 0.00 0.23 5.46 84.66 0.46 0.70 16 16 N -0.93 -55.10 13.29 21.45 0.28 -54.82 16 17 Si 0.98 40.68 29.54 68.60 2.03 42.71 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 19 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.03 1.27 6.10 -2.39 -0.01 1.26 16 24 H 0.10 1.85 7.18 -2.39 -0.02 1.83 16 25 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 27 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 28 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.15 2.21 7.21 -2.39 -0.02 2.19 16 30 H 0.41 11.68 8.32 -92.71 -0.77 10.91 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 33 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -77.33 288.53 2.95 -74.37 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.34 Total: 18.01 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.21 Total: 8.85 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -5.58 Total: -116.53 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -77.33 2.95 -74.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111550895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.352 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds