Wall clock time and date at job start Mon Mar 30 2020 17:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47013 * 2 1 4 4 C 1.50698 * 109.46770 * 120.00181 * 2 1 3 5 5 H 1.07999 * 120.00025 * 120.00402 * 4 2 1 6 6 C 1.37876 * 119.99769 * 299.99605 * 4 2 1 7 7 N 1.31512 * 120.00468 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47190 * 90.00000 * 8 6 4 10 10 H 1.48495 * 109.47497 * 210.00299 * 8 6 4 11 11 H 1.48502 * 109.46946 * 330.00480 * 8 6 4 12 12 N 1.46503 * 109.47210 * 240.00096 * 2 1 3 13 13 C 1.46495 * 119.99808 * 300.00365 * 12 2 1 14 14 C 1.34777 * 119.99907 * 119.99836 * 12 2 1 15 15 O 1.21284 * 119.99941 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99946 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46955 * 180.02562 * 16 14 12 18 18 C 1.41381 * 126.57424 * 90.00355 * 17 16 14 19 19 C 1.34520 * 106.83580 * 179.72986 * 18 17 16 20 20 O 1.34302 * 108.42210 * 0.26485 * 19 18 17 21 21 C 1.34302 * 109.47622 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47333 * 299.99893 * 1 2 3 23 23 H 1.09006 * 109.46893 * 59.99998 * 1 2 3 24 24 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 25 25 H 0.96994 * 119.99962 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46957 * 269.99699 * 13 12 2 27 27 H 1.08995 * 109.47476 * 29.99724 * 13 12 2 28 28 H 1.09005 * 109.47181 * 150.00145 * 13 12 2 29 29 H 1.09007 * 109.46960 * 60.00376 * 16 14 12 30 30 H 1.08999 * 109.46970 * 300.00269 * 16 14 12 31 31 H 1.08002 * 126.58570 * 359.97438 * 18 17 16 32 32 H 1.08004 * 125.78733 * 180.22473 * 19 18 17 33 33 H 1.07999 * 125.79201 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.0866 1.1255 -1.8912 16 6 3.2961 -0.7461 -3.3135 17 6 4.1337 0.2010 -4.1335 18 6 5.5287 0.4027 -4.0239 19 6 5.8626 1.3252 -4.9442 20 8 4.7491 1.6951 -5.5977 21 6 3.6971 1.0189 -5.1081 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7082 1.1608 3.4844 26 1 2.4157 -2.7376 -0.9717 27 1 0.6905 -2.3001 -0.9847 28 1 1.6238 -2.2851 -2.5003 29 1 2.4485 -1.0890 -3.9070 30 1 3.9018 -1.6022 -3.0165 31 1 6.1986 -0.0921 -3.3361 32 1 6.8573 1.7046 -5.1262 33 1 2.6745 1.1131 -5.4427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123231515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:19 Heat of formation + Delta-G solvation = -19.272439 kcal Electronic energy + Delta-G solvation = -16741.633574 eV Core-core repulsion = 13962.480895 eV Total energy + Delta-G solvation = -2779.152679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.33533 -38.95300 -35.35113 -33.70391 -32.78923 -30.39633 -29.33043 -27.24775 -26.02602 -25.18117 -21.65004 -21.39698 -20.05291 -18.29691 -17.15174 -16.60677 -16.14310 -15.60361 -15.12051 -14.84920 -14.49871 -14.10935 -13.14031 -12.78907 -12.60880 -12.57699 -12.25776 -12.13323 -11.58294 -11.46412 -11.22137 -11.02685 -10.81195 -10.67088 -10.21880 -10.14800 -9.58717 -9.14753 -8.86332 -8.41181 -8.29246 -7.53992 -6.05436 -4.13347 1.97166 2.78807 3.27895 3.32236 3.34194 3.35687 3.46575 4.10733 4.42265 4.94270 5.01777 5.21533 5.25029 5.38187 5.56475 5.71171 5.77936 5.90753 6.08155 6.22068 6.31798 6.34594 6.66988 6.78319 6.84305 7.08229 7.29372 7.47651 7.55769 7.74112 8.04346 8.22512 8.58008 8.86529 9.12702 9.53349 10.99873 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.005781 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.385188 B = 4842.571643 C = 4994.080680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.596 5.596 13 C 0.087 3.913 14 C 0.503 3.497 15 O -0.545 6.545 16 C -0.073 4.073 17 C -0.152 4.152 18 C -0.196 4.196 19 C -0.051 4.051 20 O -0.180 6.180 21 C -0.035 4.035 22 H 0.093 0.907 23 H 0.011 0.989 24 H 0.030 0.970 25 H 0.263 0.737 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.199 0.801 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -4.671 -13.102 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.328 5.328 13 C -0.058 4.058 14 C 0.289 3.711 15 O -0.424 6.424 16 C -0.113 4.113 17 C -0.154 4.154 18 C -0.215 4.215 19 C -0.119 4.119 20 O -0.076 6.076 21 C -0.102 4.102 22 H 0.112 0.888 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.216 0.784 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.114 -3.733 -13.056 14.189 hybrid contribution 0.315 -0.750 1.209 1.457 sum 4.430 -4.483 -11.846 13.419 Atomic orbital electron populations 1.22090 0.98309 0.99297 1.00803 1.18922 0.90799 0.94539 0.80054 0.91967 1.21326 1.31692 1.12923 0.90339 0.92338 1.24901 0.94979 0.95006 0.98972 1.69878 1.36407 1.22699 1.23710 0.86496 0.78645 0.79849 0.82392 1.20643 1.21127 1.19934 1.48242 1.49262 1.11626 1.23676 1.21555 1.01599 0.83319 0.99277 1.20325 0.79240 0.87234 0.84283 1.90660 1.57848 1.17134 1.76716 1.20097 0.99081 0.97433 0.94668 1.19911 0.94218 1.02028 0.99246 1.21686 0.95540 1.02346 1.01926 1.23872 0.90396 1.00637 0.96960 1.84019 1.15783 1.54853 1.52979 1.23720 0.91656 0.95865 0.98996 0.88846 0.97025 0.95123 0.92714 0.93365 0.90915 0.92952 0.88814 0.88604 0.83754 0.78441 0.78495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.67 2.64 -69.08 -0.18 6.48 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.35 8.37 -34.44 -0.29 -14.63 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.60 -12.79 2.75 -175.26 -0.48 -13.27 16 13 C 0.09 1.43 9.48 59.84 0.57 2.00 16 14 C 0.50 10.54 7.67 -10.98 -0.08 10.45 16 15 O -0.55 -13.91 15.36 5.55 0.09 -13.82 16 16 C -0.07 -1.10 4.77 -29.03 -0.14 -1.24 16 17 C -0.15 -2.37 4.66 -104.74 -0.49 -2.86 16 18 C -0.20 -2.87 10.87 -39.70 -0.43 -3.30 16 19 C -0.05 -0.66 12.09 29.42 0.36 -0.31 16 20 O -0.18 -2.58 10.65 5.71 0.06 -2.51 16 21 C -0.03 -0.50 12.01 29.42 0.35 -0.14 16 22 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 28 H 0.05 0.66 6.44 -51.93 -0.33 0.32 16 29 H 0.09 1.14 7.40 -51.92 -0.38 0.76 16 30 H 0.10 1.29 8.11 -51.93 -0.42 0.86 16 31 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.20 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 282.16 15.07 4.25 4.25 Total: -1.00 -33.21 282.16 -4.72 -37.93 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.14 Total: 1.13 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.10 Total: -5.08 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.14 Total: -38.09 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.15 Total: -16.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.21 -4.72 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.659 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds