Wall clock time and date at job start Mon Mar 30 2020 17:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47013 * 2 1 4 4 C 1.50698 * 109.46770 * 120.00181 * 2 1 3 5 5 H 1.07999 * 120.00025 * 120.00402 * 4 2 1 6 6 C 1.37876 * 119.99769 * 299.99605 * 4 2 1 7 7 N 1.31512 * 120.00468 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99819 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47190 * 90.00000 * 8 6 4 10 10 H 1.48495 * 109.47497 * 210.00299 * 8 6 4 11 11 H 1.48502 * 109.46946 * 330.00480 * 8 6 4 12 12 N 1.46503 * 109.47210 * 240.00096 * 2 1 3 13 13 C 1.46495 * 119.99808 * 300.00365 * 12 2 1 14 14 C 1.34777 * 119.99907 * 119.99836 * 12 2 1 15 15 O 1.21284 * 119.99941 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99946 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46955 * 180.02562 * 16 14 12 18 18 C 1.41381 * 126.57424 * 90.00355 * 17 16 14 19 19 C 1.34520 * 106.83580 * 179.72986 * 18 17 16 20 20 O 1.34302 * 108.42210 * 0.26485 * 19 18 17 21 21 C 1.34302 * 109.47622 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47333 * 299.99893 * 1 2 3 23 23 H 1.09006 * 109.46893 * 59.99998 * 1 2 3 24 24 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 25 25 H 0.96994 * 119.99962 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46957 * 269.99699 * 13 12 2 27 27 H 1.08995 * 109.47476 * 29.99724 * 13 12 2 28 28 H 1.09005 * 109.47181 * 150.00145 * 13 12 2 29 29 H 1.09007 * 109.46960 * 60.00376 * 16 14 12 30 30 H 1.08999 * 109.46970 * 300.00269 * 16 14 12 31 31 H 1.08002 * 126.58570 * 359.97438 * 18 17 16 32 32 H 1.08004 * 125.78733 * 180.22473 * 19 18 17 33 33 H 1.07999 * 125.79201 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7121 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.0866 1.1255 -1.8912 16 6 3.2961 -0.7461 -3.3135 17 6 4.1337 0.2010 -4.1335 18 6 5.5287 0.4027 -4.0239 19 6 5.8626 1.3252 -4.9442 20 8 4.7491 1.6951 -5.5977 21 6 3.6971 1.0189 -5.1081 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7082 1.1608 3.4844 26 1 2.4157 -2.7376 -0.9717 27 1 0.6905 -2.3001 -0.9847 28 1 1.6238 -2.2851 -2.5003 29 1 2.4485 -1.0890 -3.9070 30 1 3.9018 -1.6022 -3.0165 31 1 6.1986 -0.0921 -3.3361 32 1 6.8573 1.7046 -5.1262 33 1 2.6745 1.1131 -5.4427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123231515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:19 Heat of formation + Delta-G solvation = -41.228834 kcal Electronic energy + Delta-G solvation = -16742.585674 eV Core-core repulsion = 13962.480895 eV Total energy + Delta-G solvation = -2780.104780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.39057 -40.60619 -37.14702 -35.02292 -34.62338 -31.88141 -30.80939 -28.50924 -27.52691 -27.25155 -23.34549 -22.44207 -21.36119 -19.86234 -18.52063 -18.28994 -17.80122 -17.06033 -16.64980 -16.35402 -15.99098 -15.45039 -14.72102 -14.34335 -14.26958 -13.69997 -13.63641 -13.49872 -13.37092 -12.93957 -12.86880 -12.68142 -12.61993 -12.35244 -12.16488 -12.09007 -11.18114 -10.87231 -10.55238 -10.34281 -9.37366 -9.28546 -8.14466 -6.31378 0.92605 1.40710 1.42038 1.52068 1.65859 1.87587 2.33810 2.38261 2.63235 3.13137 3.83987 3.98397 4.04329 4.19386 4.46893 4.59031 4.65719 4.73498 4.80517 4.86355 4.89507 5.05844 5.10389 5.16394 5.34224 5.47057 5.59967 5.66928 5.69274 6.05889 6.17342 6.23904 6.77410 6.89350 7.34216 7.54202 8.89751 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.005781 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.385188 B = 4842.571643 C = 4994.080680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.260 1.260 12 N -0.603 5.603 13 C 0.081 3.919 14 C 0.493 3.507 15 O -0.603 6.603 16 C -0.056 4.056 17 C -0.181 4.181 18 C -0.226 4.226 19 C -0.044 4.044 20 O -0.189 6.189 21 C -0.040 4.040 22 H 0.065 0.935 23 H 0.020 0.980 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.237 0.763 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -6.602 -14.138 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.184 1.184 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.282 3.718 15 O -0.485 6.485 16 C -0.096 4.096 17 C -0.183 4.183 18 C -0.246 4.246 19 C -0.111 4.111 20 O -0.085 6.085 21 C -0.108 4.108 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.167 0.833 32 H 0.253 0.747 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.517 -5.714 -14.119 15.887 hybrid contribution 0.219 -0.101 1.493 1.512 sum 4.736 -5.814 -12.625 14.685 Atomic orbital electron populations 1.21867 0.97116 1.00170 0.99884 1.18509 0.91669 0.92100 0.81995 0.97747 1.21595 1.31772 1.12991 0.91228 0.92168 1.25765 0.95106 0.95682 1.02115 1.70027 1.37385 1.24022 1.24391 0.85450 0.77733 0.79259 0.78538 1.20945 1.20505 1.18427 1.48262 1.49279 1.13499 1.22382 1.21847 1.01445 0.80223 1.02571 1.21405 0.78116 0.86791 0.85463 1.90627 1.59767 1.19918 1.78185 1.20060 1.00495 0.97103 0.91899 1.20173 0.94859 1.03163 1.00086 1.21979 0.95749 1.03705 1.03120 1.24606 0.91349 0.99415 0.95697 1.84033 1.16274 1.54909 1.53258 1.24246 0.92656 0.95161 0.98715 0.91596 0.96069 0.93171 0.92677 0.92750 0.91238 0.88168 0.85107 0.86470 0.83257 0.74721 0.76121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.95 71.98 0.64 -5.78 16 2 C 0.26 13.76 2.64 44.25 0.12 13.88 16 3 H 0.00 0.29 6.90 -2.39 -0.02 0.28 16 4 C -0.54 -29.66 8.37 25.60 0.21 -29.44 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.19 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.89 11.32 21.45 0.24 -53.64 16 8 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.60 -25.48 2.75 -826.79 -2.28 -27.76 16 13 C 0.08 2.45 9.48 127.77 1.21 3.67 16 14 C 0.49 20.45 7.67 87.66 0.67 21.12 16 15 O -0.60 -31.69 15.36 -3.04 -0.05 -31.74 16 16 C -0.06 -1.56 4.77 29.10 0.14 -1.42 16 17 C -0.18 -5.35 4.66 -19.94 -0.09 -5.44 16 18 C -0.23 -6.37 10.87 22.19 0.24 -6.13 16 19 C -0.04 -1.06 12.09 66.97 0.81 -0.25 16 20 O -0.19 -5.10 10.65 -2.47 -0.03 -5.12 16 21 C -0.04 -1.09 12.01 66.97 0.80 -0.29 16 22 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 23 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 2.15 6.43 -2.39 -0.02 2.13 16 28 H 0.10 2.06 6.44 -2.38 -0.02 2.04 16 29 H 0.13 2.62 7.40 -2.38 -0.02 2.60 16 30 H 0.12 2.76 8.11 -2.39 -0.02 2.74 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.22 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -75.12 282.16 6.23 -68.89 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.10 Total: 12.80 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 5.21 Total: -8.93 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.03 Total: -81.40 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.07 Total: -36.86 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -75.12 6.23 -68.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123231515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.661 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds