Wall clock time and date at job start Mon Mar 30 2020 17:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.01553 * 2 1 4 4 C 1.38225 * 120.02208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96960 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47150 * 90.00368 * 5 4 3 7 7 C 1.46899 * 110.99820 * 66.04130 * 6 5 4 8 8 C 1.46899 * 111.00039 * 189.99563 * 6 5 4 9 9 C 1.50701 * 109.47266 * 169.99572 * 8 6 5 10 10 H 1.08008 * 119.99569 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00307 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00033 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99713 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47042 * 90.00103 * 13 11 9 15 15 H 1.48501 * 109.47093 * 209.99905 * 13 11 9 16 16 H 1.48500 * 109.47471 * 329.99749 * 13 11 9 17 17 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 18 18 C 1.38176 * 120.02823 * 359.97438 * 17 4 3 19 19 C 1.38445 * 120.00815 * 179.97438 * 2 1 3 20 20 F 1.35093 * 120.02545 * 359.74916 * 19 2 1 21 21 H 1.08996 * 109.47218 * 270.02360 * 1 2 3 22 22 H 1.09004 * 109.46567 * 30.01967 * 1 2 3 23 23 H 1.08997 * 109.47335 * 150.01519 * 1 2 3 24 24 H 1.07992 * 119.98884 * 359.97438 * 3 2 1 25 25 H 1.09006 * 109.47126 * 210.00047 * 5 4 3 26 26 H 1.08991 * 109.47418 * 330.00196 * 5 4 3 27 27 H 1.08998 * 109.47380 * 60.00634 * 7 6 5 28 28 H 1.09012 * 109.46569 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47413 * 300.00186 * 7 6 5 30 30 H 1.08993 * 109.47270 * 290.00120 * 8 6 5 31 31 H 1.09001 * 109.46944 * 49.99947 * 8 6 5 32 32 H 0.97002 * 120.00017 * 179.97438 * 12 11 9 33 33 H 1.08000 * 119.98535 * 180.02562 * 17 4 3 34 34 H 1.08000 * 120.01901 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3334 2.5026 0.0011 6 7 4.5775 2.9265 1.3863 7 6 5.4884 1.9975 2.0683 8 6 5.0948 4.3005 1.4330 9 6 5.1009 4.7869 2.8593 10 1 4.7553 4.1397 3.6520 11 6 5.5475 6.0579 3.1525 12 7 5.5523 6.4825 4.3971 13 14 6.1444 7.1774 1.7814 14 1 5.0027 7.9683 1.2557 15 1 7.1823 8.0982 2.3107 16 1 6.7228 6.3559 0.6879 17 6 4.2733 0.0003 0.0016 18 6 3.5843 -1.1974 0.0027 19 6 2.1994 -1.1989 0.0005 20 9 1.5246 -2.3692 0.0062 21 1 -0.3633 0.0004 1.0276 22 1 -0.3632 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5136 24 1 1.6585 2.1321 -0.0004 25 1 5.2861 2.3730 -0.5124 26 1 3.7441 3.2619 -0.5127 27 1 6.4408 1.9681 1.5390 28 1 5.6523 2.3351 3.0918 29 1 5.0485 1.0003 2.0803 30 1 6.1105 4.3199 1.0382 31 1 4.4585 4.9490 0.8307 32 1 5.8668 7.3766 4.6034 33 1 5.3533 0.0017 0.0024 34 1 4.1254 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157785954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:12 Heat of formation + Delta-G solvation = -22.361332 kcal Electronic energy + Delta-G solvation = -16305.711385 eV Core-core repulsion = 13538.797551 eV Total energy + Delta-G solvation = -2766.913834 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.84964 -39.36510 -36.53805 -33.04421 -32.42564 -31.06301 -27.96437 -26.91578 -26.57927 -23.74420 -22.31835 -20.79146 -19.98696 -17.47098 -16.87848 -16.50448 -15.66146 -15.25325 -14.71171 -14.35184 -14.19870 -13.89119 -13.38945 -13.26805 -13.21831 -12.86570 -12.42822 -12.32034 -11.81297 -11.69716 -11.38728 -11.15493 -11.05873 -10.79244 -10.54115 -10.34565 -9.91669 -9.32189 -8.81814 -8.59539 -8.41162 -7.41929 -6.07097 -4.04782 1.21605 1.30796 3.26407 3.34111 3.35245 3.61560 4.31814 4.39716 4.70394 4.77825 4.84366 5.04619 5.25367 5.28357 5.33282 5.49307 5.55204 5.66167 5.81594 5.91417 6.07388 6.09626 6.15357 6.22182 6.22996 6.36673 6.63053 6.72077 6.83033 6.95029 6.98678 7.54725 7.84693 7.99061 8.62813 9.01610 9.54167 11.06003 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043404 B = 0.005052 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.946000 B = 5540.599688 C = 5664.986235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.121 4.121 3 C -0.072 4.072 4 C -0.067 4.067 5 C 0.086 3.914 6 N -0.525 5.525 7 C 0.033 3.967 8 C 0.161 3.839 9 C -0.510 4.510 10 H 0.081 0.919 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.875 3.125 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.268 1.268 17 C -0.092 4.092 18 C -0.152 4.152 19 C 0.083 3.917 20 F -0.145 7.145 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.134 0.866 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.011 0.989 28 H 0.080 0.920 29 H 0.051 0.949 30 H -0.011 1.011 31 H 0.024 0.976 32 H 0.264 0.736 33 H 0.128 0.872 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 -12.933 -11.060 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.068 4.068 5 C -0.042 4.042 6 N -0.249 5.249 7 C -0.115 4.115 8 C 0.035 3.965 9 C -0.548 4.548 10 H 0.099 0.901 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.702 3.298 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.111 4.111 18 C -0.170 4.170 19 C 0.064 3.936 20 F -0.123 7.123 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.152 0.848 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.732 -12.801 -10.690 17.635 hybrid contribution 1.084 0.495 -0.981 1.544 sum -4.648 -12.306 -11.671 17.586 Atomic orbital electron populations 1.20703 0.90395 1.02944 1.02821 1.19914 0.96875 0.91942 1.03428 1.20842 0.93507 0.97009 0.97720 1.19978 0.93798 0.95167 0.97862 1.21100 0.97749 0.93070 0.92256 1.61980 1.47565 1.03929 1.11426 1.22330 0.92874 0.95540 1.00805 1.20213 0.92778 0.84691 0.98780 1.21024 1.42433 0.99758 0.91586 0.90095 1.24894 0.95389 0.97714 0.95303 1.69891 1.47611 1.18574 1.17809 0.86870 0.79045 0.81065 0.82816 1.20107 1.21184 1.19306 1.20923 1.00053 0.91092 0.99005 1.21026 0.92155 0.99509 1.04349 1.17507 0.90045 0.80755 1.05276 1.91442 1.80507 1.46210 1.94170 0.90809 0.90975 0.91564 0.84840 0.94705 0.90280 0.97015 0.90102 0.93005 0.99295 0.95750 0.92634 0.85400 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.83 36.01 0.35 -0.82 16 2 C -0.12 -1.57 5.89 -104.55 -0.62 -2.19 16 3 C -0.07 -1.00 9.35 -39.59 -0.37 -1.37 16 4 C -0.07 -0.99 4.88 -104.62 -0.51 -1.50 16 5 C 0.09 1.42 5.12 -4.97 -0.03 1.39 16 6 N -0.53 -10.78 4.74 -245.82 -1.17 -11.95 16 7 C 0.03 0.63 8.95 60.06 0.54 1.16 16 8 C 0.16 3.84 3.79 -4.98 -0.02 3.83 16 9 C -0.51 -14.35 9.01 -34.44 -0.31 -14.66 16 10 H 0.08 2.49 7.37 -52.48 -0.39 2.10 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 13 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 17 C -0.09 -1.21 7.96 -39.60 -0.32 -1.53 16 18 C -0.15 -1.89 10.03 -39.51 -0.40 -2.29 16 19 C 0.08 1.11 7.24 -39.41 -0.29 0.83 16 20 F -0.14 -1.92 16.48 2.25 0.04 -1.89 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 23 H 0.07 0.65 7.64 -51.93 -0.40 0.25 16 24 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 25 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 26 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 1.73 6.76 -51.92 -0.35 1.38 16 29 H 0.05 0.87 6.16 -51.93 -0.32 0.55 16 30 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 31 H 0.02 0.57 7.36 -51.93 -0.38 0.19 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.13 1.51 8.03 -52.49 -0.42 1.09 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 286.17 15.07 4.31 4.31 Total: -1.00 -30.25 286.17 -7.50 -37.75 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.74 Total: -2.86 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.05 Total: -15.27 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.39 Total: -38.57 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.25 -7.50 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157785954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds