Wall clock time and date at job start Mon Mar 30 2020 17:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38218 * 120.01553 * 2 1 4 4 C 1.38225 * 120.02208 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.96960 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.47150 * 90.00368 * 5 4 3 7 7 C 1.46899 * 110.99820 * 66.04130 * 6 5 4 8 8 C 1.46899 * 111.00039 * 189.99563 * 6 5 4 9 9 C 1.50701 * 109.47266 * 169.99572 * 8 6 5 10 10 H 1.08008 * 119.99569 * 0.02562 * 9 8 6 11 11 C 1.37874 * 120.00307 * 180.02562 * 9 8 6 12 12 N 1.31510 * 120.00033 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99713 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47042 * 90.00103 * 13 11 9 15 15 H 1.48501 * 109.47093 * 209.99905 * 13 11 9 16 16 H 1.48500 * 109.47471 * 329.99749 * 13 11 9 17 17 C 1.38263 * 120.05445 * 359.97438 * 4 3 2 18 18 C 1.38176 * 120.02823 * 359.97438 * 17 4 3 19 19 C 1.38445 * 120.00815 * 179.97438 * 2 1 3 20 20 F 1.35093 * 120.02545 * 359.74916 * 19 2 1 21 21 H 1.08996 * 109.47218 * 270.02360 * 1 2 3 22 22 H 1.09004 * 109.46567 * 30.01967 * 1 2 3 23 23 H 1.08997 * 109.47335 * 150.01519 * 1 2 3 24 24 H 1.07992 * 119.98884 * 359.97438 * 3 2 1 25 25 H 1.09006 * 109.47126 * 210.00047 * 5 4 3 26 26 H 1.08991 * 109.47418 * 330.00196 * 5 4 3 27 27 H 1.08998 * 109.47380 * 60.00634 * 7 6 5 28 28 H 1.09012 * 109.46569 * 179.97438 * 7 6 5 29 29 H 1.08998 * 109.47413 * 300.00186 * 7 6 5 30 30 H 1.08993 * 109.47270 * 290.00120 * 8 6 5 31 31 H 1.09001 * 109.46944 * 49.99947 * 8 6 5 32 32 H 0.97002 * 120.00017 * 179.97438 * 12 11 9 33 33 H 1.08000 * 119.98535 * 180.02562 * 17 4 3 34 34 H 1.08000 * 120.01901 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3334 2.5026 0.0011 6 7 4.5775 2.9265 1.3863 7 6 5.4884 1.9975 2.0683 8 6 5.0948 4.3005 1.4330 9 6 5.1009 4.7869 2.8593 10 1 4.7553 4.1397 3.6520 11 6 5.5475 6.0579 3.1525 12 7 5.5523 6.4825 4.3971 13 14 6.1444 7.1774 1.7814 14 1 5.0027 7.9683 1.2557 15 1 7.1823 8.0982 2.3107 16 1 6.7228 6.3559 0.6879 17 6 4.2733 0.0003 0.0016 18 6 3.5843 -1.1974 0.0027 19 6 2.1994 -1.1989 0.0005 20 9 1.5246 -2.3692 0.0062 21 1 -0.3633 0.0004 1.0276 22 1 -0.3632 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5136 24 1 1.6585 2.1321 -0.0004 25 1 5.2861 2.3730 -0.5124 26 1 3.7441 3.2619 -0.5127 27 1 6.4408 1.9681 1.5390 28 1 5.6523 2.3351 3.0918 29 1 5.0485 1.0003 2.0803 30 1 6.1105 4.3199 1.0382 31 1 4.4585 4.9490 0.8307 32 1 5.8668 7.3766 4.6034 33 1 5.3533 0.0017 0.0024 34 1 4.1254 -2.1320 0.0039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157785954.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:12 Heat of formation + Delta-G solvation = -40.827591 kcal Electronic energy + Delta-G solvation = -16306.512142 eV Core-core repulsion = 13538.797551 eV Total energy + Delta-G solvation = -2767.714591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.87161 -40.45035 -38.04519 -34.77112 -33.76768 -32.32676 -29.78291 -27.98520 -27.87972 -25.35239 -23.41758 -22.32062 -21.31386 -18.96492 -18.48085 -17.56289 -16.81049 -16.64410 -16.19827 -15.91779 -15.81272 -15.02392 -14.60684 -14.38232 -14.27965 -14.20916 -14.05510 -13.52716 -13.24104 -13.09779 -12.69966 -12.56032 -12.48343 -12.31540 -11.96333 -11.84661 -11.79609 -11.43528 -10.76781 -9.81869 -9.49207 -8.99083 -8.26591 -6.30380 0.16451 0.30866 1.37215 1.38539 1.49033 2.36164 2.55339 3.06977 3.31770 3.43805 3.72126 3.82665 3.91916 4.24146 4.30718 4.46199 4.49059 4.64855 4.70479 4.71338 4.75568 4.87691 4.95566 5.03731 5.08753 5.18619 5.21677 5.24039 5.37596 5.52976 5.64134 5.95199 6.00787 6.34558 6.65060 6.76280 7.33335 8.90148 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.043404 B = 0.005052 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.946000 B = 5540.599688 C = 5664.986235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.082 4.082 5 C 0.089 3.911 6 N -0.544 5.544 7 C 0.040 3.960 8 C 0.171 3.829 9 C -0.517 4.517 10 H 0.036 0.964 11 C 0.007 3.993 12 N -0.950 5.950 13 Si 0.949 3.051 14 H -0.264 1.264 15 H -0.284 1.284 16 H -0.249 1.249 17 C -0.094 4.094 18 C -0.149 4.149 19 C 0.072 3.928 20 F -0.146 7.146 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.137 0.863 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.074 0.926 30 H -0.008 1.008 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.143 0.857 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -13.477 -13.327 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.082 4.082 5 C -0.038 4.038 6 N -0.268 5.268 7 C -0.108 4.108 8 C 0.044 3.956 9 C -0.555 4.555 10 H 0.054 0.946 11 C -0.190 4.190 12 N -0.591 5.591 13 Si 0.772 3.228 14 H -0.189 1.189 15 H -0.210 1.210 16 H -0.172 1.172 17 C -0.112 4.112 18 C -0.167 4.167 19 C 0.053 3.947 20 F -0.124 7.124 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.155 0.845 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.612 -13.377 -12.974 19.462 hybrid contribution 0.977 0.541 -0.216 1.138 sum -4.635 -12.836 -13.190 18.979 Atomic orbital electron populations 1.20764 0.88852 1.03987 1.03276 1.20159 0.98168 0.91590 1.02697 1.20958 0.93507 0.97573 0.98034 1.19913 0.94078 0.94829 0.99420 1.21114 0.98752 0.94203 0.89709 1.61845 1.47703 1.02709 1.14509 1.22230 0.93660 0.96101 0.98840 1.19974 0.93120 0.86848 0.95677 1.21271 1.41803 0.99427 0.93037 0.94610 1.25862 0.95552 0.99558 0.98035 1.70056 1.49205 1.19326 1.20481 0.85693 0.78771 0.78745 0.79582 1.18902 1.20956 1.17230 1.21082 1.00845 0.90720 0.98573 1.21276 0.91963 1.00303 1.03178 1.17737 0.90616 0.80853 1.05531 1.91440 1.80588 1.46218 1.94197 0.90555 0.89618 0.90904 0.84497 0.93367 0.89698 0.95656 0.93619 0.90789 0.99077 0.94944 0.92459 0.83916 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.83 71.24 0.70 -1.46 16 2 C -0.13 -3.05 5.89 -19.82 -0.12 -3.16 16 3 C -0.08 -2.15 9.35 22.26 0.21 -1.94 16 4 C -0.08 -2.23 4.88 -19.86 -0.10 -2.33 16 5 C 0.09 2.75 5.12 85.56 0.44 3.19 16 6 N -0.54 -21.82 4.74 -931.64 -4.42 -26.24 16 7 C 0.04 1.49 8.95 127.69 1.14 2.64 16 8 C 0.17 7.97 3.79 85.56 0.32 8.29 16 9 C -0.52 -29.71 9.01 25.60 0.23 -29.48 16 10 H 0.04 2.31 7.37 -2.91 -0.02 2.29 16 11 C 0.01 0.40 5.47 84.65 0.46 0.87 16 12 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 13 Si 0.95 43.25 27.47 68.60 1.88 45.14 16 14 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 17 C -0.09 -2.23 7.96 22.26 0.18 -2.05 16 18 C -0.15 -3.33 10.03 22.31 0.22 -3.11 16 19 C 0.07 1.77 7.24 22.38 0.16 1.94 16 20 F -0.15 -3.60 16.48 44.97 0.74 -2.86 16 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 23 H 0.07 1.29 7.64 -2.39 -0.02 1.27 16 24 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 25 H 0.05 1.36 8.07 -2.38 -0.02 1.34 16 26 H 0.08 2.48 7.87 -2.39 -0.02 2.46 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.04 2.01 6.76 -2.38 -0.02 1.99 16 29 H 0.07 2.40 6.16 -2.39 -0.01 2.39 16 30 H -0.01 -0.39 7.18 -2.39 -0.02 -0.41 16 31 H 0.03 1.46 7.36 -2.39 -0.02 1.45 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.14 2.92 8.03 -2.91 -0.02 2.90 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -65.60 286.17 3.38 -62.22 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.02 Total: 7.37 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.86 Total: -26.61 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -4.12 Total: -85.26 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.74 Total: -2.86 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Total: -65.60 3.38 -62.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157785954.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds