Wall clock time and date at job start Mon Mar 30 2020 17:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99748 * 2 1 4 4 H 1.48492 * 109.47239 * 270.00246 * 3 2 1 5 5 H 1.48506 * 109.47039 * 30.00004 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99908 * 3 2 1 7 7 C 1.37878 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99676 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47420 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99769 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99953 * 180.02562 * 13 12 11 16 16 N 1.46494 * 109.47023 * 179.97438 * 15 13 12 17 17 C 1.34954 * 126.03475 * 124.99747 * 16 15 13 18 18 C 1.35316 * 107.74368 * 179.73518 * 17 16 15 19 19 C 1.39868 * 107.92272 * 0.02562 * 18 17 16 20 20 N 1.30837 * 108.20148 * 359.97438 * 19 18 17 21 21 H 0.96993 * 120.00556 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47181 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47063 * 300.00399 * 9 7 2 24 24 H 1.09007 * 109.46705 * 59.99801 * 10 9 7 25 25 H 1.08998 * 109.47386 * 300.00196 * 10 9 7 26 26 H 1.08993 * 109.46791 * 60.00337 * 11 10 9 27 27 H 1.08999 * 109.47034 * 299.99903 * 11 10 9 28 28 H 0.96996 * 120.00074 * 359.97438 * 12 11 10 29 29 H 1.08999 * 109.46800 * 59.99220 * 15 13 12 30 30 H 1.09007 * 109.46625 * 299.99540 * 15 13 12 31 31 H 1.07999 * 126.12395 * 359.71501 * 17 16 15 32 32 H 1.07999 * 126.03437 * 179.97438 * 18 17 16 33 33 H 1.08001 * 125.89990 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6362 -0.0012 12 7 6.0401 -4.0174 -0.0017 13 6 7.3652 -4.2636 -0.0022 14 8 8.1533 -3.3417 -0.0028 15 6 7.8677 -5.6844 -0.0033 16 7 9.3326 -5.6843 -0.0044 17 6 10.1272 -6.3106 0.8887 18 6 11.4117 -6.0716 0.5366 19 6 11.4018 -5.2715 -0.6106 20 7 10.1560 -5.0388 -0.9358 21 1 -0.4850 0.8399 0.0004 22 1 3.8752 -0.6794 0.8894 23 1 3.8745 -0.6806 -0.8905 24 1 3.6580 -3.1504 -0.8897 25 1 3.6588 -3.1500 0.8903 26 1 5.9157 -2.1221 0.8883 27 1 5.9143 -2.1227 -0.8916 28 1 5.4098 -4.7547 -0.0008 29 1 7.5039 -6.1977 -0.8935 30 1 7.5046 -6.1988 0.8866 31 1 9.7970 -6.8972 1.7333 32 1 12.2894 -6.4340 1.0510 33 1 12.2721 -4.9083 -1.1369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171504490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:33 Heat of formation + Delta-G solvation = 35.988853 kcal Electronic energy + Delta-G solvation = -15728.339013 eV Core-core repulsion = 12983.875395 eV Total energy + Delta-G solvation = -2744.463618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.29915 -39.45452 -35.63386 -33.58344 -33.26375 -31.50754 -30.20697 -28.32089 -26.55584 -23.04796 -21.45516 -21.21130 -20.75863 -19.89121 -17.57103 -17.27122 -16.72221 -15.89489 -15.51823 -14.92642 -14.44868 -14.17638 -14.05079 -13.65811 -13.30879 -12.95320 -12.73620 -12.56369 -12.01376 -11.91783 -11.13668 -10.92597 -10.73500 -10.33059 -10.06043 -9.89006 -9.75296 -9.40725 -9.26450 -8.97723 -8.73357 -8.58484 -6.09347 -4.08389 1.74033 2.23289 2.52408 2.77510 3.18085 3.29545 3.37209 3.41341 4.30935 4.41929 4.56033 4.64667 4.75348 4.92829 5.24771 5.39480 5.49121 5.59112 5.61121 5.85582 5.95076 6.24514 6.38531 6.50298 6.60625 6.73162 6.78529 7.18469 7.31846 7.47537 7.60349 7.72783 8.17169 8.46739 8.94106 9.52889 11.03857 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.003646 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.288335 B = 7677.525588 C = 7967.988429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.724 5.724 13 C 0.493 3.507 14 O -0.515 6.515 15 C 0.114 3.886 16 N -0.362 5.362 17 C 0.050 3.950 18 C -0.273 4.273 19 C 0.037 3.963 20 N -0.266 5.266 21 H 0.264 0.736 22 H 0.019 0.981 23 H 0.014 0.986 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.400 0.600 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.173 0.827 32 H 0.147 0.853 33 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.249 -15.044 1.814 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.276 3.724 14 O -0.389 6.389 15 C -0.011 4.011 16 N -0.145 5.145 17 C -0.095 4.095 18 C -0.302 4.302 19 C -0.150 4.150 20 N -0.086 5.086 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.190 0.810 32 H 0.164 0.836 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 17.722 -13.652 0.998 22.393 hybrid contribution 0.487 0.145 0.651 0.825 sum 18.209 -13.507 1.649 22.731 Atomic orbital electron populations 1.69903 1.06324 1.27019 1.50913 1.25025 0.94746 0.99252 0.94412 0.86778 0.80388 0.83515 0.78640 1.20203 1.21322 1.18923 1.21085 0.89267 0.94523 1.51237 0.90992 1.19504 0.97305 0.91421 0.96700 1.21709 0.90434 1.01149 1.01777 1.21676 0.96200 0.80754 1.02059 1.46089 1.06117 1.10338 1.75109 1.20486 0.83135 0.90887 0.77861 1.90792 1.55077 1.45387 1.47620 1.21508 0.76655 0.96804 1.06161 1.48103 1.05113 1.39533 1.21760 1.22541 0.91316 0.99528 0.96106 1.21483 0.96746 1.09779 1.02229 1.23930 0.95375 0.98494 0.97238 1.77524 1.01518 1.16480 1.13082 0.92649 0.96309 0.96722 0.92031 0.92039 0.91748 0.91663 0.76558 0.86798 0.85764 0.80967 0.83563 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 11 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 12 N -0.72 -9.06 5.56 -60.29 -0.33 -9.39 16 13 C 0.49 6.71 7.86 -10.98 -0.09 6.63 16 14 O -0.51 -9.70 15.72 5.56 0.09 -9.61 16 15 C 0.11 1.03 6.99 -5.19 -0.04 1.00 16 16 N -0.36 -4.30 3.39 -62.54 -0.21 -4.52 16 17 C 0.05 0.47 11.45 -17.22 -0.20 0.27 16 18 C -0.27 -2.65 10.80 -40.01 -0.43 -3.08 16 19 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 20 N -0.27 -3.88 11.66 30.62 0.36 -3.52 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 23 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.40 3.62 8.47 -40.82 -0.35 3.27 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.12 0.60 8.07 -51.92 -0.42 0.18 16 31 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -36.70 290.24 -5.79 -42.49 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.50 Total: -1.24 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.67 Total: -8.78 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.58 Total: -44.28 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.70 -5.79 -42.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.484 kcal (2) G-P(sol) polarization free energy of solvation -36.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds