Wall clock time and date at job start Mon Mar 30 2020 17:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99748 * 2 1 4 4 H 1.48492 * 109.47239 * 270.00246 * 3 2 1 5 5 H 1.48506 * 109.47039 * 30.00004 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99908 * 3 2 1 7 7 C 1.37878 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99676 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99981 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47420 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99769 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99953 * 180.02562 * 13 12 11 16 16 N 1.46494 * 109.47023 * 179.97438 * 15 13 12 17 17 C 1.34954 * 126.03475 * 124.99747 * 16 15 13 18 18 C 1.35316 * 107.74368 * 179.73518 * 17 16 15 19 19 C 1.39868 * 107.92272 * 0.02562 * 18 17 16 20 20 N 1.30837 * 108.20148 * 359.97438 * 19 18 17 21 21 H 0.96993 * 120.00556 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47181 * 59.99825 * 9 7 2 23 23 H 1.08998 * 109.47063 * 300.00399 * 9 7 2 24 24 H 1.09007 * 109.46705 * 59.99801 * 10 9 7 25 25 H 1.08998 * 109.47386 * 300.00196 * 10 9 7 26 26 H 1.08993 * 109.46791 * 60.00337 * 11 10 9 27 27 H 1.08999 * 109.47034 * 299.99903 * 11 10 9 28 28 H 0.96996 * 120.00074 * 359.97438 * 12 11 10 29 29 H 1.08999 * 109.46800 * 59.99220 * 15 13 12 30 30 H 1.09007 * 109.46625 * 299.99540 * 15 13 12 31 31 H 1.07999 * 126.12395 * 359.71501 * 17 16 15 32 32 H 1.07999 * 126.03437 * 179.97438 * 18 17 16 33 33 H 1.08001 * 125.89990 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5517 -2.6362 -0.0012 12 7 6.0401 -4.0174 -0.0017 13 6 7.3652 -4.2636 -0.0022 14 8 8.1533 -3.3417 -0.0028 15 6 7.8677 -5.6844 -0.0033 16 7 9.3326 -5.6843 -0.0044 17 6 10.1272 -6.3106 0.8887 18 6 11.4117 -6.0716 0.5366 19 6 11.4018 -5.2715 -0.6106 20 7 10.1560 -5.0388 -0.9358 21 1 -0.4850 0.8399 0.0004 22 1 3.8752 -0.6794 0.8894 23 1 3.8745 -0.6806 -0.8905 24 1 3.6580 -3.1504 -0.8897 25 1 3.6588 -3.1500 0.8903 26 1 5.9157 -2.1221 0.8883 27 1 5.9143 -2.1227 -0.8916 28 1 5.4098 -4.7547 -0.0008 29 1 7.5039 -6.1977 -0.8935 30 1 7.5046 -6.1988 0.8866 31 1 9.7970 -6.8972 1.7333 32 1 12.2894 -6.4340 1.0510 33 1 12.2721 -4.9083 -1.1369 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171504490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:32 Heat of formation + Delta-G solvation = 8.402504 kcal Electronic energy + Delta-G solvation = -15729.535247 eV Core-core repulsion = 12983.875395 eV Total energy + Delta-G solvation = -2745.659852 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.06953 -40.53902 -37.04635 -35.18491 -34.31523 -33.25017 -30.97330 -29.61749 -27.84611 -24.65616 -22.43341 -22.23901 -21.92283 -21.05703 -19.02968 -18.25821 -18.16195 -16.94909 -16.74151 -16.15796 -16.02512 -15.37509 -15.09313 -14.79623 -14.47373 -14.26134 -13.85326 -13.79603 -13.56561 -13.10465 -12.75580 -12.71348 -11.96789 -11.80972 -11.61618 -11.52068 -11.35037 -11.14211 -10.77983 -10.30571 -10.14378 -9.48110 -8.31177 -6.34858 0.99235 1.35102 1.36763 1.48155 1.51921 1.54930 2.02542 2.21301 2.34436 3.04704 3.61567 3.79396 4.07527 4.10296 4.16162 4.19290 4.27519 4.47589 4.73924 4.85895 4.88375 4.93889 5.02431 5.18531 5.34217 5.47537 5.53812 5.63367 5.75738 6.13426 6.25690 6.52739 6.73468 6.82818 7.19491 7.30229 8.85181 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.003646 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.288335 B = 7677.525588 C = 7967.988429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.041 0.959 9 C -0.014 4.014 10 C -0.099 4.099 11 C 0.129 3.871 12 N -0.711 5.711 13 C 0.491 3.509 14 O -0.573 6.573 15 C 0.117 3.883 16 N -0.376 5.376 17 C 0.055 3.945 18 C -0.286 4.286 19 C 0.025 3.975 20 N -0.329 5.329 21 H 0.266 0.734 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.420 0.580 29 H 0.138 0.862 30 H 0.175 0.825 31 H 0.217 0.783 32 H 0.171 0.829 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.670 -16.352 2.677 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.059 0.941 9 C -0.052 4.052 10 C -0.136 4.136 11 C 0.005 3.995 12 N -0.365 5.365 13 C 0.276 3.724 14 O -0.451 6.451 15 C -0.007 4.007 16 N -0.159 5.159 17 C -0.089 4.089 18 C -0.315 4.315 19 C -0.162 4.162 20 N -0.150 5.150 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.258 0.742 29 H 0.156 0.844 30 H 0.192 0.808 31 H 0.233 0.767 32 H 0.188 0.812 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 19.135 -15.011 1.858 24.391 hybrid contribution 0.011 0.459 0.399 0.608 sum 19.146 -14.552 2.257 24.154 Atomic orbital electron populations 1.70043 1.08151 1.28145 1.52690 1.25954 0.95562 1.03325 0.94270 0.85731 0.79486 0.78763 0.79126 1.19381 1.20915 1.17353 1.21464 0.91819 0.93332 1.50179 0.94117 1.19477 0.94166 0.94896 0.96635 1.21473 0.91684 0.98005 1.02485 1.21254 0.94527 0.82791 1.00972 1.45861 1.06627 1.09458 1.74511 1.21331 0.82509 0.92464 0.76072 1.90772 1.56452 1.47645 1.50254 1.21811 0.75580 0.93607 1.09726 1.48344 1.05983 1.39704 1.21854 1.23305 0.90972 0.98512 0.96143 1.21893 0.98159 1.09583 1.01846 1.24405 0.95277 0.98403 0.98084 1.77431 1.03002 1.18998 1.15582 0.92473 0.96227 0.96546 0.91492 0.91189 0.92723 0.93103 0.74240 0.84428 0.80768 0.76679 0.81184 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.34 5.47 84.66 0.46 0.81 16 3 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 6 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 7 C -0.53 -29.81 9.66 25.60 0.25 -29.56 16 8 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.10 -3.42 5.27 30.59 0.16 -3.26 16 11 C 0.13 3.98 5.67 86.38 0.49 4.48 16 12 N -0.71 -16.24 5.56 -463.06 -2.57 -18.81 16 13 C 0.49 12.47 7.86 87.66 0.69 13.16 16 14 O -0.57 -21.48 15.72 -3.04 -0.05 -21.53 16 15 C 0.12 1.73 6.99 85.64 0.60 2.33 16 16 N -0.38 -8.10 3.39 -351.79 -1.19 -9.29 16 17 C 0.06 0.86 11.45 83.54 0.96 1.82 16 18 C -0.29 -4.95 10.80 21.99 0.24 -4.71 16 19 C 0.02 0.56 12.03 85.24 1.02 1.58 16 20 N -0.33 -9.49 11.66 -57.02 -0.66 -10.15 16 21 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 22 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 23 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 24 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 25 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.42 6.26 8.47 -92.71 -0.79 5.48 16 29 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.18 0.76 8.07 -2.38 -0.02 0.74 16 31 H 0.22 1.19 8.06 -2.91 -0.02 1.16 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -82.60 290.24 2.96 -79.64 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.26 Total: 6.36 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 4.99 Total: -13.86 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -4.13 Total: -97.03 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -82.60 2.96 -79.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.047 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds