Wall clock time and date at job start Mon Mar 30 2020 17:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 C 1.53004 * 109.46885 * 120.00311 * 2 1 3 5 5 N 1.46510 * 109.46826 * 174.99737 * 4 2 1 6 6 C 1.39890 * 119.99693 * 179.97438 * 5 4 2 7 7 C 1.39089 * 119.96169 * 0.02653 * 6 5 4 8 8 C 1.38620 * 120.46751 * 179.97438 * 7 6 5 9 9 C 1.37577 * 120.38664 * 359.71341 * 8 7 6 10 10 C 1.40793 * 119.90450 * 0.56175 * 9 8 7 11 11 C 1.41321 * 120.22742 * 179.71483 * 10 9 8 12 12 H 1.07999 * 119.99874 * 156.15538 * 11 10 9 13 13 C 1.39916 * 119.99991 * 335.87765 * 11 10 9 14 14 N 1.30852 * 120.00385 * 341.38978 * 13 11 10 15 15 Si 1.86806 * 120.00117 * 161.38688 * 13 11 10 16 16 H 1.48502 * 109.46918 * 60.00071 * 15 13 11 17 17 H 1.48496 * 109.47354 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47194 * 300.00379 * 15 13 11 19 19 C 1.38592 * 119.95815 * 179.97438 * 6 5 4 20 20 F 1.35101 * 120.19198 * 0.02562 * 19 6 5 21 21 H 1.08999 * 109.47154 * 299.99969 * 1 2 3 22 22 H 1.08996 * 109.46850 * 59.99978 * 1 2 3 23 23 H 1.08996 * 109.47072 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46847 * 239.99652 * 2 1 3 25 25 H 1.08996 * 109.47161 * 299.99831 * 3 2 1 26 26 H 1.08999 * 109.46965 * 59.99916 * 3 2 1 27 27 H 1.09001 * 109.47041 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47388 * 55.00174 * 4 2 1 29 29 H 1.08998 * 109.46945 * 294.99404 * 4 2 1 30 30 H 0.96996 * 119.99950 * 359.97438 * 5 4 2 31 31 H 1.08004 * 119.76727 * 359.95520 * 7 6 5 32 32 H 1.07999 * 119.80869 * 180.02562 * 8 7 6 33 33 H 1.07995 * 120.05096 * 180.27715 * 9 8 7 34 34 H 0.96998 * 120.00443 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1986 -1.4513 2.2291 7 6 3.5061 -1.9729 3.3167 8 6 4.1877 -2.5946 4.3514 9 6 5.5581 -2.7088 4.3124 10 6 6.2757 -2.1813 3.2219 11 6 7.6841 -2.2895 3.1777 12 1 8.1990 -2.2526 2.2291 13 6 8.4118 -2.4385 4.3634 14 7 7.8672 -2.1199 5.5098 15 14 10.1608 -3.0924 4.3100 16 1 11.0019 -2.1892 3.4840 17 1 10.7081 -3.1554 5.6890 18 1 10.1628 -4.4527 3.7145 19 6 5.5798 -1.5509 2.1724 20 9 6.2547 -1.0455 1.1168 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6054 -1.7198 1.2951 29 1 1.7517 -0.1584 2.1370 30 1 3.9824 -0.4629 0.4316 31 1 2.4298 -1.8926 3.3556 32 1 3.6392 -2.9962 5.1906 33 1 6.0832 -3.1981 5.1193 34 1 8.3718 -2.2228 6.3318 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161649040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:05 Heat of formation + Delta-G solvation = -47.800853 kcal Electronic energy + Delta-G solvation = -16487.537875 eV Core-core repulsion = 13719.520901 eV Total energy + Delta-G solvation = -2768.016974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.04076 -37.92909 -36.46282 -34.12444 -32.54337 -29.50093 -27.99810 -27.18409 -25.33442 -24.71984 -21.05105 -20.51040 -19.78604 -17.39367 -16.10147 -15.81741 -15.23560 -14.98187 -14.67503 -13.96797 -13.90479 -13.53145 -13.06119 -12.97146 -12.63276 -12.45064 -12.11219 -11.76278 -11.61065 -11.19859 -11.12440 -10.98378 -10.93466 -10.70866 -10.54610 -10.41457 -9.81849 -9.50095 -9.29000 -8.78782 -7.36074 -6.80891 -6.22036 -4.37319 2.76382 3.04999 3.07321 3.10916 3.26380 3.92486 4.20362 4.61364 4.87084 4.92617 5.11503 5.57007 5.61053 5.63501 5.72073 5.83489 5.87871 6.01480 6.04954 6.10688 6.26681 6.28899 6.37762 6.70921 6.92854 6.99693 7.19687 7.32283 7.65187 7.78156 8.05190 8.14692 8.35682 8.53673 8.66800 8.81525 8.99818 10.14749 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.046721 B = 0.005692 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.156634 B = 4918.375527 C = 5332.120358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.142 3.858 5 N -0.760 5.760 6 C 0.206 3.794 7 C -0.288 4.288 8 C -0.077 4.077 9 C -0.186 4.186 10 C 0.118 3.882 11 C -0.454 4.454 12 H 0.081 0.919 13 C 0.079 3.921 14 N -0.785 5.785 15 Si 0.911 3.089 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.100 4.100 20 F -0.168 7.168 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.391 0.609 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.329 2.231 -5.287 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.016 3.984 5 N -0.394 5.394 6 C 0.106 3.894 7 C -0.311 4.311 8 C -0.096 4.096 9 C -0.206 4.206 10 C 0.114 3.886 11 C -0.483 4.483 12 H 0.099 0.901 13 C -0.140 4.140 14 N -0.410 5.410 15 Si 0.735 3.265 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.124 4.124 20 F -0.148 7.148 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.225 0.775 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.443 2.259 -4.989 10.064 hybrid contribution 1.035 0.017 -0.329 1.087 sum -7.408 2.275 -5.319 9.399 Atomic orbital electron populations 1.21753 0.94639 1.01858 1.01802 1.21331 0.96021 0.96771 0.98621 1.21832 1.01567 0.95561 1.01415 1.21139 0.81778 0.98825 0.96612 1.44355 1.04568 1.66916 1.23548 1.17433 0.89113 0.93979 0.88888 1.19727 0.97167 1.16417 0.97782 1.20468 0.94605 0.98297 0.96271 1.21011 0.92115 1.06454 1.01055 1.17397 0.93455 0.88054 0.89653 1.19477 0.91453 1.43364 0.93990 0.90102 1.25912 1.00857 0.92527 0.94746 1.69852 1.38723 1.33063 0.99312 0.86316 0.81392 0.80597 0.78164 1.18902 1.20245 1.18681 1.17264 0.87383 1.15572 0.92214 1.91195 1.80836 1.86906 1.55857 0.92491 0.92610 0.92534 0.90947 0.92982 0.92589 0.92313 0.93220 0.93136 0.77488 0.88773 0.89003 0.86083 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 2 C -0.11 -1.30 2.96 -90.62 -0.27 -1.57 16 3 C -0.15 -1.71 9.07 37.16 0.34 -1.37 16 4 C 0.14 2.16 4.30 -4.03 -0.02 2.14 16 5 N -0.76 -14.50 5.46 -58.61 -0.32 -14.82 16 6 C 0.21 4.82 6.65 -83.73 -0.56 4.26 16 7 C -0.29 -6.53 9.32 -39.12 -0.36 -6.90 16 8 C -0.08 -1.82 10.01 -39.68 -0.40 -2.22 16 9 C -0.19 -4.88 8.70 -38.86 -0.34 -5.22 16 10 C 0.12 3.28 5.58 -106.78 -0.60 2.68 16 11 C -0.45 -12.51 8.78 -37.78 -0.33 -12.84 16 12 H 0.08 2.21 7.72 -52.49 -0.41 1.80 16 13 C 0.08 2.00 5.12 -17.34 -0.09 1.91 16 14 N -0.79 -20.33 10.98 55.55 0.61 -19.72 16 15 Si 0.91 18.89 29.60 -169.99 -5.03 13.86 16 16 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 19 C -0.10 -2.63 7.31 -38.48 -0.28 -2.91 16 20 F -0.17 -4.36 16.06 2.25 0.04 -4.33 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 28 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 29 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 30 H 0.39 7.20 7.13 -40.82 -0.29 6.91 16 31 H 0.09 1.90 6.70 -52.48 -0.35 1.55 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 34 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -28.24 286.41 -7.61 -35.86 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.66 Total: 7.92 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.56 Total: -23.08 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.29 Total: -34.54 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.04 Total: -4.33 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.24 -7.61 -35.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161649040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.944 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds