Wall clock time and date at job start Mon Mar 30 2020 17:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00486 * 2 1 4 4 C 1.50698 * 109.47308 * 180.02562 * 3 2 1 5 5 C 1.38024 * 120.01651 * 0.02805 * 4 3 2 6 6 C 1.38776 * 120.03604 * 179.97438 * 5 4 3 7 7 O 1.35941 * 119.97146 * 180.02562 * 6 5 4 8 8 C 1.42893 * 117.00481 * 180.02562 * 7 6 5 9 9 C 1.38819 * 120.06590 * 0.02562 * 6 5 4 10 10 C 1.37984 * 120.03409 * 359.72180 * 9 6 5 11 11 C 1.39063 * 120.01985 * 180.02562 * 4 3 2 12 12 N 1.39407 * 120.03013 * 0.02562 * 11 4 3 13 13 C 1.36828 * 119.99660 * 180.02562 * 12 11 4 14 14 H 1.08002 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.38759 * 119.99675 * 179.72306 * 13 12 11 16 16 N 1.31614 * 120.00315 * 0.27465 * 15 13 12 17 17 Si 1.86803 * 119.99869 * 180.27637 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47428 * 120.00187 * 17 15 13 20 20 H 1.48498 * 109.47018 * 240.00059 * 17 15 13 21 21 H 1.09003 * 109.46531 * 299.99652 * 1 2 3 22 22 H 1.08997 * 109.47027 * 59.99013 * 1 2 3 23 23 H 1.08993 * 109.47732 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46593 * 60.00832 * 3 2 1 25 25 H 1.08998 * 109.47383 * 300.00339 * 3 2 1 26 26 H 1.08000 * 119.98239 * 359.95277 * 5 4 3 27 27 H 1.09001 * 109.47204 * 59.99759 * 8 7 6 28 28 H 1.08994 * 109.47620 * 180.02562 * 8 7 6 29 29 H 1.09005 * 109.47110 * 300.00411 * 8 7 6 30 30 H 1.08001 * 119.98358 * 180.02562 * 9 6 5 31 31 H 1.07995 * 120.01880 * 180.28113 * 10 9 6 32 32 H 0.97000 * 119.99907 * 359.97438 * 12 11 4 33 33 H 0.96996 * 120.00453 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1065 -0.0596 -0.0017 6 6 5.4898 -0.1697 -0.0028 7 8 6.0734 -1.3975 -0.0044 8 6 7.5017 -1.4370 -0.0049 9 6 6.2785 0.9727 -0.0023 10 6 5.6877 2.2197 -0.0066 11 6 4.3013 2.3317 -0.0002 12 7 3.7029 3.5908 0.0013 13 6 4.4796 4.7173 0.0012 14 1 5.5561 4.6310 -0.0005 15 6 3.8840 5.9706 -0.0030 16 7 2.5721 6.0758 -0.0015 17 14 4.9443 7.5085 -0.0110 18 1 6.3779 7.1213 -0.0110 19 1 4.6471 8.3084 -1.2263 20 1 4.6508 8.3183 1.1986 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6888 1.8462 0.8901 25 1 1.6887 1.8464 -0.8899 26 1 3.4942 -0.9493 -0.0013 27 1 7.8795 -0.9344 0.8855 28 1 7.8366 -2.4743 -0.0066 29 1 7.8789 -0.9324 -0.8944 30 1 7.3549 0.8855 -0.0036 31 1 6.3015 3.1083 -0.0108 32 1 2.7360 3.6683 0.0018 33 1 2.1557 6.9518 -0.0041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:16 Heat of formation + Delta-G solvation = -73.260012 kcal Electronic energy + Delta-G solvation = -16545.271630 eV Core-core repulsion = 13763.777875 eV Total energy + Delta-G solvation = -2781.493756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90157 -39.22234 -38.31278 -36.15236 -33.48712 -32.60675 -29.95825 -28.10729 -27.51311 -26.33395 -26.18868 -22.77554 -21.78988 -19.57266 -18.69487 -17.99665 -17.37143 -16.83188 -16.33360 -16.28627 -16.11718 -15.89353 -15.54010 -14.81023 -14.31540 -14.11143 -13.59399 -13.50103 -13.34008 -12.96468 -12.91517 -12.50088 -12.38350 -12.38187 -12.09097 -11.96272 -11.31104 -11.30486 -10.74680 -10.29238 -9.54591 -8.42027 -8.16960 -5.64215 0.61346 0.92502 1.43404 1.48678 1.55964 2.30668 2.74302 2.82294 2.89076 3.34977 3.50079 4.03764 4.20039 4.30835 4.43354 4.48119 4.52073 4.54143 4.60769 4.64968 4.78161 4.82900 4.84161 4.91989 5.29074 5.39122 5.45756 5.73474 5.75204 5.86058 6.05974 6.28670 6.85233 6.87987 7.55491 7.69564 8.77450 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.007856 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.267693 B = 3563.439845 C = 5014.953606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.131 3.869 4 C -0.189 4.189 5 C -0.072 4.072 6 C 0.006 3.994 7 O -0.343 6.343 8 C 0.024 3.976 9 C -0.135 4.135 10 C -0.201 4.201 11 C 0.179 3.821 12 N -0.592 5.592 13 C -0.311 4.311 14 H 0.104 0.896 15 C -0.034 4.034 16 N -0.937 5.937 17 Si 0.995 3.005 18 H -0.258 1.258 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.108 0.892 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.128 0.872 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.054 0.946 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.391 0.609 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -9.554 -0.016 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.054 3.946 4 C -0.196 4.196 5 C -0.091 4.091 6 C -0.040 4.040 7 O -0.258 6.258 8 C -0.070 4.070 9 C -0.154 4.154 10 C -0.225 4.225 11 C 0.064 3.936 12 N -0.201 5.201 13 C -0.441 4.441 14 H 0.122 0.878 15 C -0.232 4.232 16 N -0.578 5.578 17 Si 0.819 3.181 18 H -0.182 1.182 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.126 0.874 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.146 0.854 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.225 0.775 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.105 -9.480 -0.017 9.976 hybrid contribution -0.260 1.442 -0.005 1.465 sum 2.845 -8.038 -0.021 8.527 Atomic orbital electron populations 1.22973 0.79455 1.04161 1.00682 1.87801 1.21417 1.27217 1.95525 1.20727 0.89982 0.84527 0.99344 1.18801 0.93671 0.91855 1.15232 1.19789 0.91589 0.96678 1.01067 1.18556 0.92157 0.84062 1.09271 1.85928 1.22974 1.26078 1.90848 1.23148 0.77835 1.04666 1.01394 1.21054 0.99855 0.91162 1.03371 1.20388 0.92500 0.97526 1.12115 1.17884 0.92792 0.84921 0.98045 1.40864 1.07784 1.01620 1.69820 1.20005 0.92543 0.84330 1.47204 0.87833 1.26068 0.97255 1.01923 0.97941 1.69796 1.10051 1.25901 1.52026 0.84807 0.78444 0.77259 0.77569 1.18216 1.20654 1.20657 0.93514 0.93522 0.87381 0.93425 0.93432 0.85389 0.92721 0.86532 0.92729 0.84036 0.86313 0.77518 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.40 -13.87 9.18 -148.98 -1.37 -15.24 16 3 C 0.13 5.05 5.07 71.24 0.36 5.41 16 4 C -0.19 -8.08 5.90 -19.72 -0.12 -8.20 16 5 C -0.07 -2.91 9.31 22.35 0.21 -2.70 16 6 C 0.01 0.23 6.69 22.54 0.15 0.38 16 7 O -0.34 -11.48 10.50 -92.88 -0.97 -12.46 16 8 C 0.02 0.55 9.81 113.37 1.11 1.67 16 9 C -0.14 -5.00 9.03 22.35 0.20 -4.80 16 10 C -0.20 -8.61 9.30 22.42 0.21 -8.41 16 11 C 0.18 8.30 6.60 38.34 0.25 8.55 16 12 N -0.59 -30.10 5.37 -184.25 -0.99 -31.09 16 13 C -0.31 -16.32 9.55 84.04 0.80 -15.52 16 14 H 0.10 5.19 5.68 -2.91 -0.02 5.17 16 15 C -0.03 -1.79 5.50 84.85 0.47 -1.32 16 16 N -0.94 -51.58 13.05 21.64 0.28 -51.29 16 17 Si 0.99 41.32 29.55 68.60 2.03 43.35 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.05 1.86 8.06 -2.38 -0.02 1.84 16 25 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 26 H 0.13 4.97 7.00 -2.91 -0.02 4.95 16 27 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 28 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.16 7.66 -2.38 -0.02 1.14 16 30 H 0.14 4.23 6.29 -2.91 -0.02 4.21 16 31 H 0.12 5.06 5.95 -2.91 -0.02 5.04 16 32 H 0.39 20.31 6.57 -92.71 -0.61 19.70 16 33 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -60.67 280.54 4.39 -56.28 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.52 Total: 33.57 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.90 Total: -23.11 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -0.71 Total: -82.39 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -2.34 Total: -27.70 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -60.67 4.39 -56.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.980 kcal (2) G-P(sol) polarization free energy of solvation -60.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds