Wall clock time and date at job start Mon Mar 30 2020 17:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47094 * 2 1 4 4 C 1.35353 * 126.37742 * 84.99727 * 3 2 1 5 5 C 1.41543 * 105.50114 * 180.02562 * 4 3 2 6 6 C 1.47614 * 126.52103 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00163 * 355.10250 * 6 5 4 8 8 N 1.34777 * 119.99548 * 175.10218 * 6 5 4 9 9 C 1.46502 * 119.99679 * 185.45299 * 8 6 5 10 10 C 1.36910 * 120.00374 * 5.45232 * 8 6 5 11 11 H 1.07992 * 119.99887 * 34.92035 * 10 8 6 12 12 C 1.39018 * 119.99873 * 214.92210 * 10 8 6 13 13 N 1.31377 * 120.00373 * 5.20428 * 12 10 8 14 14 Si 1.86806 * 119.99963 * 185.20563 * 12 10 8 15 15 H 1.48500 * 109.46781 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46932 * 119.99613 * 14 12 10 17 17 H 1.48496 * 109.47213 * 240.00272 * 14 12 10 18 18 N 1.31858 * 106.95458 * 0.02562 * 5 4 3 19 19 N 1.28465 * 110.06213 * 359.97438 * 18 5 4 20 20 C 1.46506 * 124.88016 * 179.73677 * 19 18 5 21 21 H 1.08998 * 109.47456 * 299.99904 * 1 2 3 22 22 H 1.09003 * 109.47533 * 59.99866 * 1 2 3 23 23 H 1.09007 * 109.47225 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47405 * 240.00475 * 2 1 3 25 25 H 1.09003 * 109.47533 * 120.00134 * 2 1 3 26 26 H 1.08002 * 127.24610 * 359.97438 * 4 3 2 27 27 H 1.08992 * 109.47239 * 85.00283 * 9 8 6 28 28 H 1.09002 * 109.47381 * 205.00610 * 9 8 6 29 29 H 1.09002 * 109.46902 * 325.00139 * 9 8 6 30 30 H 0.97001 * 120.00104 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47217 * 90.02226 * 20 19 18 32 32 H 1.08999 * 109.46607 * 210.02573 * 20 19 18 33 33 H 1.09001 * 109.46968 * 330.02070 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2102 2.2094 1.0856 5 6 2.6920 3.4418 0.5831 6 6 3.0404 4.6376 1.3754 7 8 2.8385 4.6526 2.5744 8 7 3.5823 5.7128 0.7697 9 6 4.0381 6.8520 1.5700 10 6 3.7068 5.7403 -0.5935 11 1 2.9547 5.2759 -1.2139 12 6 4.8014 6.3661 -1.1789 13 7 5.7672 6.8411 -0.4255 14 14 4.8991 6.5316 -3.0371 15 1 3.6946 5.9188 -3.6526 16 1 4.9657 7.9693 -3.4031 17 1 6.1149 5.8378 -3.5326 18 7 2.7692 3.3188 -0.7275 19 7 2.3878 2.1448 -1.0832 20 6 2.3391 1.6628 -2.4658 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 2.0232 1.9525 2.1178 27 1 5.0539 6.6674 1.9194 28 1 4.0224 7.7547 0.9592 29 1 3.3771 6.9817 2.4270 30 1 6.5308 7.2780 -0.8340 31 1 3.2932 1.2034 -2.7242 32 1 1.5421 0.9261 -2.5658 33 1 2.1458 2.5004 -3.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191646282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:29 Heat of formation + Delta-G solvation = 28.512913 kcal Electronic energy + Delta-G solvation = -17094.763025 eV Core-core repulsion = 14349.975225 eV Total energy + Delta-G solvation = -2744.787799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.41047 -40.08722 -36.72711 -35.16190 -34.09479 -33.41033 -30.19760 -29.08210 -27.62530 -26.40520 -24.39141 -23.27206 -21.53974 -20.51086 -18.96933 -17.47460 -17.30127 -17.08993 -16.25817 -16.10368 -15.74795 -15.31450 -14.90153 -14.46274 -14.08744 -13.85324 -13.52545 -13.35554 -13.16311 -13.13283 -13.03323 -12.78204 -12.55136 -12.35896 -12.02954 -11.89099 -11.28030 -10.97981 -10.64675 -9.88910 -9.72243 -9.54299 -8.29615 -6.00208 0.86920 1.28624 1.42536 1.46661 1.58214 1.85165 2.30962 2.63193 2.98327 3.20511 3.69187 3.78053 4.15784 4.35496 4.40223 4.49938 4.59516 4.65930 4.73659 4.75550 4.88435 4.91033 4.95244 5.10776 5.20874 5.29682 5.42506 5.48164 5.67003 5.89699 6.15201 6.54243 7.05496 7.25164 7.57515 7.93393 8.76653 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025397 B = 0.009071 C = 0.006928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.230283 B = 3086.040507 C = 4040.620269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.021 3.979 4 C -0.219 4.219 5 C -0.020 4.020 6 C 0.516 3.484 7 O -0.637 6.637 8 N -0.443 5.443 9 C 0.133 3.867 10 C -0.328 4.328 11 H 0.115 0.885 12 C -0.009 4.009 13 N -0.907 5.907 14 Si 0.994 3.006 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.280 1.280 18 N -0.259 5.259 19 N -0.295 5.295 20 C 0.076 3.924 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.151 0.849 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.129 0.871 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -13.547 -7.589 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.104 4.104 4 C -0.248 4.248 5 C -0.178 4.178 6 C 0.306 3.694 7 O -0.526 6.526 8 N -0.159 5.159 9 C -0.010 4.010 10 C -0.457 4.457 11 H 0.133 0.867 12 C -0.210 4.210 13 N -0.546 5.546 14 Si 0.817 3.183 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.205 1.205 18 N -0.094 5.094 19 N -0.084 5.084 20 C -0.063 4.063 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.169 0.831 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.147 0.853 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.117 -12.845 -8.158 16.799 hybrid contribution 0.425 0.365 0.346 0.659 sum -6.692 -12.480 -7.812 16.173 Atomic orbital electron populations 1.21744 0.93331 1.03225 1.01825 1.20251 0.96823 0.85977 1.05360 1.21887 1.04516 0.98076 0.85913 1.21567 1.10036 0.92871 1.00290 1.21792 1.08639 0.96822 0.90576 1.17672 0.83489 0.82517 0.85725 1.90534 1.63139 1.83281 1.15619 1.43709 1.51516 1.12948 1.07725 1.21138 0.97193 0.89063 0.93631 1.20363 1.07906 1.36933 0.80525 0.86743 1.26445 0.93666 0.96011 1.04898 1.70080 1.09196 1.37700 1.37595 0.84856 0.78601 0.78016 0.76815 1.17870 1.20032 1.20535 1.74159 1.17960 1.02516 1.14802 1.46136 1.44831 1.08151 1.09236 1.22490 1.05951 1.02135 0.75732 0.93637 0.92883 0.89271 0.88035 0.88521 0.83096 0.94514 0.91856 0.94074 0.91988 0.88572 0.85309 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.89 71.98 0.71 -1.55 16 2 C -0.05 -0.83 6.00 29.85 0.18 -0.65 16 3 C 0.02 0.66 6.17 41.40 0.26 0.91 16 4 C -0.22 -8.97 10.73 22.42 0.24 -8.73 16 5 C -0.02 -1.00 6.86 42.43 0.29 -0.71 16 6 C 0.52 29.88 7.63 86.72 0.66 30.54 16 7 O -0.64 -38.78 16.56 -4.02 -0.07 -38.85 16 8 N -0.44 -25.73 2.97 -662.46 -1.97 -27.70 16 9 C 0.13 7.27 8.71 127.77 1.11 8.38 16 10 C -0.33 -18.46 8.11 84.09 0.68 -17.77 16 11 H 0.12 6.33 5.74 -2.91 -0.02 6.31 16 12 C -0.01 -0.48 5.18 84.95 0.44 -0.04 16 13 N -0.91 -51.24 11.15 21.68 0.24 -51.00 16 14 Si 0.99 42.02 29.56 68.60 2.03 44.05 16 15 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 18 N -0.26 -11.82 8.72 -48.20 -0.42 -12.24 16 19 N -0.30 -9.91 3.70 -355.91 -1.32 -11.22 16 20 C 0.08 1.53 10.89 127.77 1.39 2.92 16 21 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.10 1.25 7.43 -2.38 -0.02 1.24 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.15 5.90 8.06 -2.91 -0.02 5.88 16 27 H 0.04 2.07 7.73 -2.39 -0.02 2.06 16 28 H 0.06 3.39 7.29 -2.39 -0.02 3.37 16 29 H 0.04 2.13 7.50 -2.39 -0.02 2.12 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.13 1.48 7.44 -2.39 -0.02 1.47 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.49 282.50 5.57 -70.92 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.10 Total: 12.73 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 5.97 Total: 13.31 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.46 Total: -102.17 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.07 Total: -38.85 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.49 5.57 -70.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191646282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.436 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds