Wall clock time and date at job start Mon Mar 30 2020 17:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35272 * 126.08244 * 2 1 4 4 C 1.40290 * 107.87000 * 180.02562 * 3 2 1 5 5 O 1.35998 * 125.95632 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00321 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.63705 * 29.29713 * 6 5 4 8 8 C 1.55155 * 110.72201 * 152.44041 * 6 5 4 9 9 C 1.55126 * 101.48606 * 153.73613 * 8 6 5 10 10 N 1.47427 * 104.94057 * 323.22274 * 9 8 6 11 11 C 1.36936 * 125.64532 * 203.96914 * 10 9 8 12 12 H 1.08008 * 119.99636 * 180.02562 * 11 10 9 13 13 C 1.38811 * 120.00416 * 0.04116 * 11 10 9 14 14 N 1.31611 * 119.99479 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00224 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47225 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47616 * 119.99886 * 15 13 11 18 18 H 1.48501 * 109.47112 * 240.00013 * 15 13 11 19 19 C 1.47022 * 108.70425 * 24.00454 * 10 9 8 20 20 N 1.31109 * 108.08829 * 359.75868 * 4 3 2 21 21 N 1.34949 * 126.08381 * 180.02562 * 2 1 3 22 22 H 0.97001 * 125.98716 * 359.92198 * 21 2 1 23 23 H 1.09008 * 109.47172 * 269.98603 * 1 2 3 24 24 H 1.08999 * 109.46921 * 29.98021 * 1 2 3 25 25 H 1.09001 * 109.47055 * 149.98544 * 1 2 3 26 26 H 1.07998 * 126.06805 * 0.03458 * 3 2 1 27 27 H 1.08996 * 111.00290 * 271.93986 * 8 6 5 28 28 H 1.08996 * 111.00086 * 35.79072 * 8 6 5 29 29 H 1.09000 * 110.41693 * 204.29717 * 9 8 6 30 30 H 1.08997 * 110.29884 * 82.08616 * 9 8 6 31 31 H 0.97008 * 119.99861 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.88114 * 239.52473 * 19 10 9 33 33 H 1.08999 * 110.00958 * 118.43257 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3037 1.0932 0.0000 4 6 3.6364 0.6548 -0.0006 5 8 4.7390 1.4509 -0.0013 6 6 6.0103 0.7985 -0.0024 7 1 5.9455 -0.1683 -0.5017 8 6 7.0856 1.6926 -0.6744 9 6 8.3815 1.1847 0.0103 10 7 7.9879 0.8946 1.4012 11 6 8.8304 0.8704 2.4804 12 1 8.4427 0.6458 3.4632 13 6 10.1826 1.1347 2.3115 14 7 10.6550 1.4081 1.1140 15 14 11.3319 1.1009 3.7837 16 1 10.5589 0.7700 5.0077 17 1 12.3823 0.0735 3.5683 18 1 11.9682 2.4328 3.9456 19 6 6.5413 0.6349 1.4373 20 7 3.6335 -0.6563 0.0043 21 7 2.3019 -1.0906 -0.0005 22 1 2.0033 -2.0135 0.0002 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.9727 2.1212 0.0005 27 1 7.1171 1.5236 -1.7508 28 1 6.9137 2.7454 -0.4507 29 1 9.1513 1.9561 -0.0130 30 1 8.7381 0.2788 -0.4798 31 1 11.6001 1.5925 0.9958 32 1 6.0523 1.3522 2.0965 33 1 6.3532 -0.3795 1.7889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226662383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:47 Heat of formation + Delta-G solvation = 66.849127 kcal Electronic energy + Delta-G solvation = -16535.792368 eV Core-core repulsion = 13792.666952 eV Total energy + Delta-G solvation = -2743.125416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21787 -38.51239 -36.08971 -32.42487 -32.08420 -30.49658 -29.14610 -27.38232 -26.91345 -24.52256 -21.77240 -20.66310 -20.11824 -19.67667 -17.46757 -16.90343 -16.60031 -15.44535 -14.75068 -14.45909 -14.14814 -13.81903 -13.56173 -13.33463 -12.76149 -12.54097 -12.43981 -12.33345 -11.74560 -11.47660 -10.96947 -10.80004 -10.62873 -10.24435 -10.17896 -10.02188 -9.75742 -9.54136 -8.76190 -8.63619 -8.40507 -6.81947 -5.63444 -3.05078 1.86636 2.72992 2.96354 3.42507 3.47491 3.50358 3.58811 4.51513 4.65411 4.81869 5.03884 5.20696 5.42082 5.45086 5.53628 5.54995 5.67419 5.77925 5.83832 6.05758 6.13212 6.37689 6.52972 6.57458 6.73569 6.82032 7.25970 7.50137 7.61433 7.65178 7.84335 7.95047 8.36651 9.23700 9.83995 10.48368 11.41127 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055806 B = 0.004913 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.614283 B = 5698.270221 C = 5951.611486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.102 3.898 3 C -0.277 4.277 4 C 0.276 3.724 5 O -0.281 6.281 6 C 0.075 3.925 7 H 0.083 0.917 8 C -0.139 4.139 9 C 0.154 3.846 10 N -0.602 5.602 11 C -0.220 4.220 12 H 0.079 0.921 13 C -0.012 4.012 14 N -0.924 5.924 15 Si 0.917 3.083 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.124 3.876 20 N -0.341 5.341 21 N -0.470 5.470 22 H 0.438 0.562 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.151 0.849 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.016 0.984 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 -2.448 -4.279 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.307 4.307 4 C 0.071 3.929 5 O -0.184 6.184 6 C 0.019 3.981 7 H 0.101 0.899 8 C -0.177 4.177 9 C 0.029 3.971 10 N -0.329 5.329 11 C -0.348 4.348 12 H 0.097 0.903 13 C -0.207 4.207 14 N -0.573 5.573 15 Si 0.747 3.253 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.003 4.003 20 N -0.181 5.181 21 N -0.183 5.183 22 H 0.282 0.718 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.169 0.831 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.673 -3.064 -4.215 18.425 hybrid contribution 0.059 -0.064 0.747 0.752 sum -17.614 -3.128 -3.468 18.223 Atomic orbital electron populations 1.20461 0.87059 1.03946 1.03516 1.20965 0.94521 0.87131 1.00103 1.20556 0.89086 0.99757 1.21323 1.20645 0.88586 0.88507 0.95131 1.86376 1.12342 1.31472 1.88246 1.23624 0.79330 0.96795 0.98394 0.89930 1.23273 0.95897 0.99724 0.98835 1.22014 0.92544 0.99937 0.82592 1.44386 1.01364 1.82334 1.04794 1.19150 0.88555 1.40163 0.86974 0.90340 1.24792 0.96719 1.02135 0.97068 1.69775 1.13021 1.54626 1.19829 0.85960 0.80719 0.77251 0.81353 1.20519 1.21733 1.21683 1.21596 0.87148 0.98134 0.93421 1.77540 0.96565 1.11137 1.32887 1.45719 1.03103 1.07862 1.61608 0.71798 0.90005 0.89453 0.91011 0.83097 0.91562 0.90838 0.86887 0.96614 0.93715 0.94977 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.43 36.01 0.38 -0.16 16 2 C 0.10 1.11 7.20 -82.28 -0.59 0.52 16 3 C -0.28 -3.86 10.73 -39.87 -0.43 -4.28 16 4 C 0.28 4.86 7.88 -17.09 -0.13 4.73 16 5 O -0.28 -5.52 9.95 -19.74 -0.20 -5.72 16 6 C 0.08 1.56 3.31 -24.90 -0.08 1.48 16 7 H 0.08 1.70 7.35 -51.93 -0.38 1.32 16 8 C -0.14 -2.89 6.83 -24.47 -0.17 -3.06 16 9 C 0.15 3.92 5.89 -2.41 -0.01 3.91 16 10 N -0.60 -16.46 3.40 -169.93 -0.58 -17.04 16 11 C -0.22 -6.42 10.27 -15.06 -0.15 -6.57 16 12 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 13 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 14 N -0.92 -27.44 10.09 55.49 0.56 -26.89 16 15 Si 0.92 22.57 29.55 -169.99 -5.02 17.54 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 C 0.12 2.93 7.02 -3.06 -0.02 2.91 16 20 N -0.34 -5.80 11.65 30.56 0.36 -5.44 16 21 N -0.47 -5.70 7.35 33.47 0.25 -5.45 16 22 H 0.44 3.67 8.96 -182.62 -1.64 2.03 16 23 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.11 3.16 5.87 -51.93 -0.31 2.86 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 279.80 15.07 4.22 4.22 Total: -1.00 -33.54 279.80 -7.40 -40.94 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.67 Total: -1.20 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.32 Total: -0.97 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.58 Total: -54.81 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.20 Total: -5.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.54 -7.40 -40.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226662383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.790 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds