Wall clock time and date at job start Mon Mar 30 2020 17:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35272 * 126.08244 * 2 1 4 4 C 1.40290 * 107.87000 * 180.02562 * 3 2 1 5 5 O 1.35998 * 125.95632 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00321 * 180.02562 * 5 4 3 7 7 H 1.09003 * 110.63705 * 29.29713 * 6 5 4 8 8 C 1.55155 * 110.72201 * 152.44041 * 6 5 4 9 9 C 1.55126 * 101.48606 * 153.73613 * 8 6 5 10 10 N 1.47427 * 104.94057 * 323.22274 * 9 8 6 11 11 C 1.36936 * 125.64532 * 203.96914 * 10 9 8 12 12 H 1.08008 * 119.99636 * 180.02562 * 11 10 9 13 13 C 1.38811 * 120.00416 * 0.04116 * 11 10 9 14 14 N 1.31611 * 119.99479 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00224 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47225 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47616 * 119.99886 * 15 13 11 18 18 H 1.48501 * 109.47112 * 240.00013 * 15 13 11 19 19 C 1.47022 * 108.70425 * 24.00454 * 10 9 8 20 20 N 1.31109 * 108.08829 * 359.75868 * 4 3 2 21 21 N 1.34949 * 126.08381 * 180.02562 * 2 1 3 22 22 H 0.97001 * 125.98716 * 359.92198 * 21 2 1 23 23 H 1.09008 * 109.47172 * 269.98603 * 1 2 3 24 24 H 1.08999 * 109.46921 * 29.98021 * 1 2 3 25 25 H 1.09001 * 109.47055 * 149.98544 * 1 2 3 26 26 H 1.07998 * 126.06805 * 0.03458 * 3 2 1 27 27 H 1.08996 * 111.00290 * 271.93986 * 8 6 5 28 28 H 1.08996 * 111.00086 * 35.79072 * 8 6 5 29 29 H 1.09000 * 110.41693 * 204.29717 * 9 8 6 30 30 H 1.08997 * 110.29884 * 82.08616 * 9 8 6 31 31 H 0.97008 * 119.99861 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.88114 * 239.52473 * 19 10 9 33 33 H 1.08999 * 110.00958 * 118.43257 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3037 1.0932 0.0000 4 6 3.6364 0.6548 -0.0006 5 8 4.7390 1.4509 -0.0013 6 6 6.0103 0.7985 -0.0024 7 1 5.9455 -0.1683 -0.5017 8 6 7.0856 1.6926 -0.6744 9 6 8.3815 1.1847 0.0103 10 7 7.9879 0.8946 1.4012 11 6 8.8304 0.8704 2.4804 12 1 8.4427 0.6458 3.4632 13 6 10.1826 1.1347 2.3115 14 7 10.6550 1.4081 1.1140 15 14 11.3319 1.1009 3.7837 16 1 10.5589 0.7700 5.0077 17 1 12.3823 0.0735 3.5683 18 1 11.9682 2.4328 3.9456 19 6 6.5413 0.6349 1.4373 20 7 3.6335 -0.6563 0.0043 21 7 2.3019 -1.0906 -0.0005 22 1 2.0033 -2.0135 0.0002 23 1 -0.3634 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.9727 2.1212 0.0005 27 1 7.1171 1.5236 -1.7508 28 1 6.9137 2.7454 -0.4507 29 1 9.1513 1.9561 -0.0130 30 1 8.7381 0.2788 -0.4798 31 1 11.6001 1.5925 0.9958 32 1 6.0523 1.3522 2.0965 33 1 6.3532 -0.3795 1.7889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226662383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:47 Heat of formation + Delta-G solvation = 41.884417 kcal Electronic energy + Delta-G solvation = -16536.874919 eV Core-core repulsion = 13792.666952 eV Total energy + Delta-G solvation = -2744.207967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.31934 -40.09977 -37.87423 -34.35666 -33.08240 -31.75095 -31.02648 -29.10518 -27.88560 -26.57451 -23.22997 -22.24410 -21.64562 -21.16401 -19.07591 -18.38687 -18.06094 -16.86490 -16.72514 -16.03957 -15.75743 -15.01803 -14.71414 -14.65378 -14.37471 -13.81677 -13.72612 -13.47024 -13.28259 -13.01852 -12.93839 -12.72123 -12.33447 -12.01670 -11.92595 -11.77683 -11.56214 -11.39095 -10.80968 -9.89448 -9.54108 -8.98799 -7.82843 -5.29223 0.88253 1.45893 1.47728 1.58086 1.64057 1.78711 2.34220 2.49574 3.28055 3.56325 3.66504 3.84971 3.86227 3.95399 4.10166 4.39137 4.51460 4.60241 4.69301 4.82271 4.83627 4.87749 4.91989 5.15283 5.20134 5.31065 5.39671 5.51523 5.70320 6.21727 6.25399 6.52606 6.69567 7.04113 7.68062 8.32277 9.19995 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.055806 B = 0.004913 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.614283 B = 5698.270221 C = 5951.611486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.130 3.870 3 C -0.304 4.304 4 C 0.244 3.756 5 O -0.290 6.290 6 C 0.094 3.906 7 H 0.083 0.917 8 C -0.123 4.123 9 C 0.157 3.843 10 N -0.622 5.622 11 C -0.248 4.248 12 H 0.078 0.922 13 C -0.062 4.062 14 N -0.947 5.947 15 Si 0.987 3.013 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.286 1.286 19 C 0.125 3.875 20 N -0.381 5.381 21 N -0.458 5.458 22 H 0.454 0.546 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.166 0.834 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.087 0.913 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.025 0.975 33 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.906 -2.759 -4.196 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.000 4.000 3 C -0.333 4.333 4 C 0.040 3.960 5 O -0.194 6.194 6 C 0.037 3.963 7 H 0.101 0.899 8 C -0.162 4.162 9 C 0.032 3.968 10 N -0.350 5.350 11 C -0.377 4.377 12 H 0.096 0.904 13 C -0.255 4.255 14 N -0.596 5.596 15 Si 0.815 3.185 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.213 1.213 19 C -0.001 4.001 20 N -0.222 5.222 21 N -0.173 5.173 22 H 0.301 0.699 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.115 0.885 26 H 0.183 0.817 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -19.896 -3.399 -4.138 20.604 hybrid contribution 0.593 -0.036 0.719 0.933 sum -19.302 -3.436 -3.419 19.902 Atomic orbital electron populations 1.20693 0.82809 1.05973 1.05174 1.21693 0.96613 0.85473 0.96261 1.20898 0.87795 1.01588 1.22999 1.21043 0.88909 0.89059 0.97003 1.86317 1.12312 1.31965 1.88808 1.23215 0.80285 0.96802 0.95992 0.89871 1.23094 0.93343 0.99541 1.00176 1.21817 0.94274 0.98318 0.82405 1.44674 1.02674 1.82526 1.05103 1.19491 0.89517 1.40929 0.87718 0.90373 1.25689 0.98079 1.01661 1.00038 1.70004 1.13155 1.54808 1.21666 0.84888 0.78274 0.77107 0.78257 1.19347 1.21487 1.21263 1.21627 0.85584 0.97304 0.95581 1.77401 0.99629 1.11185 1.33984 1.45764 1.01792 1.09251 1.60508 0.69867 0.88283 0.87884 0.88549 0.81676 0.88468 0.90658 0.89542 0.98436 0.93904 0.95725 0.96155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.43 71.24 0.74 0.10 16 2 C 0.13 2.46 7.20 41.40 0.30 2.76 16 3 C -0.30 -7.96 10.73 22.08 0.24 -7.72 16 4 C 0.24 8.48 7.88 85.30 0.67 9.15 16 5 O -0.29 -11.41 9.95 -93.53 -0.93 -12.34 16 6 C 0.09 3.95 3.31 31.78 0.11 4.06 16 7 H 0.08 3.47 7.35 -2.39 -0.02 3.45 16 8 C -0.12 -5.14 6.83 32.06 0.22 -4.92 16 9 C 0.16 8.21 5.89 86.93 0.51 8.72 16 10 N -0.62 -35.01 3.40 -691.55 -2.35 -37.36 16 11 C -0.25 -14.77 10.27 84.03 0.86 -13.91 16 12 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 13 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 14 N -0.95 -57.45 10.09 21.65 0.22 -57.23 16 15 Si 0.99 46.77 29.55 68.60 2.03 48.79 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 19 C 0.13 6.09 7.02 86.73 0.61 6.70 16 20 N -0.38 -12.79 11.65 -170.48 -1.99 -14.78 16 21 N -0.46 -10.16 7.35 -48.02 -0.35 -10.52 16 22 H 0.45 6.49 8.96 -213.34 -1.91 4.58 16 23 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 24 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.09 5.01 5.87 -2.39 -0.01 5.00 16 30 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 32 H 0.02 1.23 8.06 -2.39 -0.02 1.21 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -74.22 279.80 0.56 -73.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -0.80 Total: 7.99 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.72 Total: 1.78 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -4.47 Total: -119.89 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.93 Total: -12.34 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.22 0.56 -73.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226662383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.543 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds