Wall clock time and date at job start Mon Mar 30 2020 17:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 C 1.52991 * 109.46896 * 240.00107 * 2 1 3 5 5 O 1.42899 * 109.47235 * 304.99627 * 4 2 1 6 6 N 1.46302 * 114.00039 * 180.02562 * 5 4 2 7 7 O 1.42894 * 109.47062 * 119.99717 * 2 1 3 8 8 C 1.35638 * 117.00624 * 274.21884 * 7 2 1 9 9 C 1.38450 * 120.26059 * 5.32155 * 8 7 2 10 10 C 1.38308 * 120.04813 * 179.74763 * 9 8 7 11 11 C 1.38818 * 120.59167 * 0.55424 * 10 9 8 12 12 C 1.36481 * 120.53989 * 359.70081 * 11 10 9 13 13 C 1.40725 * 119.92884 * 0.02562 * 12 11 10 14 14 C 1.41157 * 120.28868 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99851 * 155.14372 * 14 13 12 16 16 C 1.39931 * 120.00485 * 335.13951 * 14 13 12 17 17 N 1.30872 * 119.99540 * 343.81578 * 16 14 13 18 18 Si 1.86795 * 120.00396 * 163.81852 * 16 14 13 19 19 H 1.48496 * 109.47227 * 89.99959 * 18 16 14 20 20 H 1.48503 * 109.47005 * 210.00135 * 18 16 14 21 21 H 1.48503 * 109.46768 * 329.99854 * 18 16 14 22 22 H 1.09002 * 109.47390 * 299.99843 * 1 2 3 23 23 H 1.08992 * 109.47404 * 59.99859 * 1 2 3 24 24 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 184.99748 * 4 2 1 26 26 H 1.09001 * 109.47622 * 64.99960 * 4 2 1 27 27 H 1.00894 * 111.00140 * 180.02562 * 6 5 4 28 28 H 1.00907 * 110.99882 * 303.95462 * 6 5 4 29 29 H 1.07998 * 119.98013 * 0.02562 * 9 8 7 30 30 H 1.07998 * 119.70511 * 180.27658 * 10 9 8 31 31 H 1.08000 * 119.73099 * 179.72305 * 11 10 9 32 32 H 1.08002 * 120.03798 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99643 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3094 6 7 1.8943 -2.8110 -2.4717 7 8 2.0063 -0.6736 1.1668 8 6 2.1278 0.0651 2.2979 9 6 1.6949 1.3799 2.3224 10 6 1.8161 2.1275 3.4797 11 6 2.3808 1.5754 4.6215 12 6 2.8203 0.2833 4.6226 13 6 2.7026 -0.4993 3.4590 14 6 3.1542 -1.8367 3.4519 15 1 2.7308 -2.5459 2.7560 16 6 4.1504 -2.2436 4.3462 17 7 4.8831 -1.3499 4.9604 18 14 4.4347 -4.0624 4.6635 19 1 5.4362 -4.5826 3.6984 20 1 4.9372 -4.2507 6.0482 21 1 3.1565 -4.7996 4.4962 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1263 -0.7994 -1.2056 26 1 1.7516 -0.1583 -2.1370 27 1 1.4662 -3.7246 -2.4695 28 1 1.6933 -2.3199 -3.3300 29 1 1.2581 1.8209 1.4386 30 1 1.4725 3.1512 3.4940 31 1 2.4727 2.1732 5.5162 32 1 3.2586 -0.1378 5.5153 33 1 5.5735 -1.6320 5.5806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:50 Heat of formation + Delta-G solvation = -18.830366 kcal Electronic energy + Delta-G solvation = -16827.297897 eV Core-core repulsion = 14048.164388 eV Total energy + Delta-G solvation = -2779.133509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.97181 -36.99303 -35.79086 -33.52576 -32.00365 -29.65889 -29.06012 -28.49044 -25.93187 -25.02847 -22.05516 -20.67682 -19.73360 -17.58024 -16.89432 -16.30089 -16.11792 -15.33640 -14.74330 -14.37129 -14.07001 -13.85811 -13.43371 -12.85310 -12.71621 -12.45455 -12.10195 -11.59548 -11.39334 -11.16303 -10.96310 -10.78746 -10.57525 -10.51910 -10.35954 -9.83861 -9.63547 -9.32712 -9.08100 -8.84777 -7.40639 -6.93359 -6.61190 -4.15460 2.82452 2.94114 3.06400 3.15375 3.20997 3.29149 4.04813 4.24029 4.72611 5.10164 5.22130 5.39232 5.52786 5.63490 5.73611 5.95564 5.97858 6.12670 6.20508 6.37022 6.52713 6.59792 6.85626 7.01887 7.18598 7.22002 7.38429 7.45341 7.80998 7.85867 8.14161 8.30730 8.51282 8.80418 8.94816 9.17091 10.30242 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.009463 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.227029 B = 2958.070066 C = 4315.531155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 H 0.080 0.920 4 C 0.068 3.932 5 O -0.222 6.222 6 N -0.680 5.680 7 O -0.291 6.291 8 C 0.012 3.988 9 C -0.181 4.181 10 C -0.217 4.217 11 C -0.127 4.127 12 C -0.147 4.147 13 C 0.097 3.903 14 C -0.442 4.442 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.800 5.800 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.261 1.261 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.364 0.636 28 H 0.332 0.668 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 0.409 -9.301 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.030 3.970 3 H 0.097 0.903 4 C -0.010 4.010 5 O -0.236 6.236 6 N -0.246 5.246 7 O -0.206 6.206 8 C -0.033 4.033 9 C -0.200 4.200 10 C -0.236 4.236 11 C -0.146 4.146 12 C -0.167 4.167 13 C 0.095 3.905 14 C -0.471 4.471 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.427 5.427 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.185 1.185 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.142 0.858 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.915 0.175 -8.719 9.559 hybrid contribution -0.757 -0.337 -0.437 0.937 sum -4.671 -0.162 -9.156 10.280 Atomic orbital electron populations 1.22261 0.95866 1.03130 1.01763 1.22164 0.94182 0.95668 0.84998 0.90251 1.22587 0.99305 0.83159 0.95904 1.90807 1.69480 1.27862 1.35475 1.64316 1.59793 1.02804 0.97677 1.86108 1.81913 1.36587 1.16007 1.19205 1.07236 0.90245 0.86586 1.20623 1.06796 0.94403 0.98150 1.20112 1.10552 0.98517 0.94455 1.20373 1.01315 0.96179 0.96716 1.20911 1.04002 0.93640 0.98128 1.17076 0.91431 0.93864 0.88170 1.19452 1.16797 0.95249 1.15622 0.89907 1.25900 0.94514 0.99788 0.94228 1.69842 1.15267 1.35496 1.22058 0.86302 0.79575 0.82777 0.78023 1.19531 1.20285 1.18481 0.91683 0.92558 0.91343 0.91507 0.92526 0.82255 0.85830 0.88665 0.89517 0.89463 0.85736 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.00 37.16 0.33 -2.40 16 2 C 0.09 1.60 2.63 -26.73 -0.07 1.53 16 3 H 0.08 1.35 6.26 -51.93 -0.32 1.02 16 4 C 0.07 1.07 6.26 37.15 0.23 1.31 16 5 O -0.22 -3.73 11.05 -18.78 -0.21 -3.94 16 6 N -0.68 -8.57 10.79 60.35 0.65 -7.92 16 7 O -0.29 -6.92 9.06 -23.47 -0.21 -7.13 16 8 C 0.01 0.29 6.64 -38.33 -0.25 0.04 16 9 C -0.18 -4.14 8.29 -39.48 -0.33 -4.47 16 10 C -0.22 -4.97 10.04 -39.34 -0.39 -5.36 16 11 C -0.13 -3.07 9.97 -40.00 -0.40 -3.47 16 12 C -0.15 -3.94 8.64 -39.28 -0.34 -4.28 16 13 C 0.10 2.71 5.59 -106.68 -0.60 2.11 16 14 C -0.44 -12.39 8.73 -37.84 -0.33 -12.72 16 15 H 0.08 2.35 7.65 -52.48 -0.40 1.95 16 16 C 0.07 1.89 5.17 -17.33 -0.09 1.80 16 17 N -0.80 -21.33 10.88 55.55 0.60 -20.73 16 18 Si 0.91 19.73 29.59 -169.99 -5.03 14.70 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 22 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.15 7.56 -51.93 -0.39 0.75 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.36 3.79 9.25 -39.29 -0.36 3.43 16 28 H 0.33 3.10 9.18 -39.29 -0.36 2.74 16 29 H 0.10 1.88 5.48 -52.49 -0.29 1.59 16 30 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.12 3.41 6.11 -52.49 -0.32 3.09 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -30.79 280.98 -6.26 -37.05 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.06 Total: 9.66 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -2.23 Total: -25.93 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 1.26 Total: -28.64 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.42 Total: -11.07 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.79 -6.26 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.219 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds