Wall clock time and date at job start Mon Mar 30 2020 17:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46839 * 2 1 4 4 C 1.52991 * 109.46896 * 240.00107 * 2 1 3 5 5 O 1.42899 * 109.47235 * 304.99627 * 4 2 1 6 6 N 1.46302 * 114.00039 * 180.02562 * 5 4 2 7 7 O 1.42894 * 109.47062 * 119.99717 * 2 1 3 8 8 C 1.35638 * 117.00624 * 274.21884 * 7 2 1 9 9 C 1.38450 * 120.26059 * 5.32155 * 8 7 2 10 10 C 1.38308 * 120.04813 * 179.74763 * 9 8 7 11 11 C 1.38818 * 120.59167 * 0.55424 * 10 9 8 12 12 C 1.36481 * 120.53989 * 359.70081 * 11 10 9 13 13 C 1.40725 * 119.92884 * 0.02562 * 12 11 10 14 14 C 1.41157 * 120.28868 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99851 * 155.14372 * 14 13 12 16 16 C 1.39931 * 120.00485 * 335.13951 * 14 13 12 17 17 N 1.30872 * 119.99540 * 343.81578 * 16 14 13 18 18 Si 1.86795 * 120.00396 * 163.81852 * 16 14 13 19 19 H 1.48496 * 109.47227 * 89.99959 * 18 16 14 20 20 H 1.48503 * 109.47005 * 210.00135 * 18 16 14 21 21 H 1.48503 * 109.46768 * 329.99854 * 18 16 14 22 22 H 1.09002 * 109.47390 * 299.99843 * 1 2 3 23 23 H 1.08992 * 109.47404 * 59.99859 * 1 2 3 24 24 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46925 * 184.99748 * 4 2 1 26 26 H 1.09001 * 109.47622 * 64.99960 * 4 2 1 27 27 H 1.00894 * 111.00140 * 180.02562 * 6 5 4 28 28 H 1.00907 * 110.99882 * 303.95462 * 6 5 4 29 29 H 1.07998 * 119.98013 * 0.02562 * 9 8 7 30 30 H 1.07998 * 119.70511 * 180.27658 * 10 9 8 31 31 H 1.08000 * 119.73099 * 179.72305 * 11 10 9 32 32 H 1.08002 * 120.03798 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99643 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.4702 -2.0303 -1.3094 6 7 1.8943 -2.8110 -2.4717 7 8 2.0063 -0.6736 1.1668 8 6 2.1278 0.0651 2.2979 9 6 1.6949 1.3799 2.3224 10 6 1.8161 2.1275 3.4797 11 6 2.3808 1.5754 4.6215 12 6 2.8203 0.2833 4.6226 13 6 2.7026 -0.4993 3.4590 14 6 3.1542 -1.8367 3.4519 15 1 2.7308 -2.5459 2.7560 16 6 4.1504 -2.2436 4.3462 17 7 4.8831 -1.3499 4.9604 18 14 4.4347 -4.0624 4.6635 19 1 5.4362 -4.5826 3.6984 20 1 4.9372 -4.2507 6.0482 21 1 3.1565 -4.7996 4.4962 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1263 -0.7994 -1.2056 26 1 1.7516 -0.1583 -2.1370 27 1 1.4662 -3.7246 -2.4695 28 1 1.6933 -2.3199 -3.3300 29 1 1.2581 1.8209 1.4386 30 1 1.4725 3.1512 3.4940 31 1 2.4727 2.1732 5.5162 32 1 3.2586 -0.1378 5.5153 33 1 5.5735 -1.6320 5.5806 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:50 Heat of formation + Delta-G solvation = -39.401192 kcal Electronic energy + Delta-G solvation = -16828.189915 eV Core-core repulsion = 14048.164388 eV Total energy + Delta-G solvation = -2780.025527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68335 -38.52268 -37.30220 -35.46826 -33.39099 -31.46739 -30.35381 -30.28543 -27.25623 -26.92056 -23.71519 -22.55272 -21.33864 -19.41481 -18.52547 -17.63831 -17.37910 -16.98504 -16.29647 -15.98557 -15.79221 -15.36289 -15.03017 -14.48109 -14.18662 -14.11006 -13.65755 -13.36116 -13.04548 -12.81976 -12.67925 -12.53409 -12.18770 -11.94085 -11.71138 -11.54210 -11.44298 -11.14526 -11.02144 -9.92583 -9.35743 -8.83720 -8.53442 -6.19511 0.95665 1.13413 1.36763 1.48019 1.53528 1.82983 2.24153 2.68721 2.78637 3.72276 3.87033 4.01904 4.09548 4.33590 4.40971 4.52848 4.55755 4.63135 4.72267 4.83191 4.92700 5.13143 5.24423 5.30503 5.47676 5.51994 5.89949 5.91520 5.94481 6.19387 6.26575 6.34907 6.57331 6.84451 6.95316 7.29876 8.38884 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.009463 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.227029 B = 2958.070066 C = 4315.531155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.092 0.908 4 C 0.073 3.927 5 O -0.259 6.259 6 N -0.677 5.677 7 O -0.321 6.321 8 C 0.006 3.994 9 C -0.182 4.182 10 C -0.205 4.205 11 C -0.138 4.138 12 C -0.167 4.167 13 C 0.054 3.946 14 C -0.481 4.481 15 H 0.063 0.937 16 C 0.032 3.968 17 N -0.830 5.830 18 Si 0.978 3.022 19 H -0.265 1.265 20 H -0.260 1.260 21 H -0.264 1.264 22 H 0.053 0.947 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.375 0.625 28 H 0.353 0.647 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 1.315 -10.683 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.109 0.891 4 C -0.004 4.004 5 O -0.272 6.272 6 N -0.248 5.248 7 O -0.236 6.236 8 C -0.039 4.039 9 C -0.200 4.200 10 C -0.225 4.225 11 C -0.156 4.156 12 C -0.187 4.187 13 C 0.052 3.948 14 C -0.511 4.511 15 H 0.081 0.919 16 C -0.181 4.181 17 N -0.458 5.458 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.185 1.185 21 H -0.188 1.188 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.120 0.880 27 H 0.190 0.810 28 H 0.164 0.836 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.673 1.106 -10.111 11.194 hybrid contribution -0.604 -0.504 -0.175 0.806 sum -5.277 0.603 -10.286 11.576 Atomic orbital electron populations 1.22177 0.94104 1.02606 1.03125 1.22629 0.95626 0.96304 0.83711 0.89066 1.22575 0.98020 0.83476 0.96379 1.90753 1.69829 1.28604 1.38001 1.64281 1.60047 1.03156 0.97290 1.86071 1.82339 1.38202 1.17032 1.19384 1.06510 0.91231 0.86780 1.21001 1.06001 0.93378 0.99651 1.20613 1.08247 1.00058 0.93552 1.20680 1.01033 0.95432 0.98467 1.20887 1.05302 0.95008 0.97523 1.17488 0.93093 0.94502 0.89753 1.19482 1.18704 0.95661 1.17234 0.91899 1.26661 0.93634 1.04261 0.93518 1.69877 1.15795 1.37387 1.22699 0.85280 0.79215 0.76998 0.78646 1.18976 1.18451 1.18815 0.92806 0.88536 0.92846 0.93482 0.88047 0.81045 0.83559 0.85116 0.85687 0.86973 0.87446 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.00 71.98 0.65 -4.16 16 2 C 0.08 2.59 2.63 30.59 0.08 2.67 16 3 H 0.09 2.87 6.26 -2.39 -0.01 2.86 16 4 C 0.07 2.17 6.26 71.98 0.45 2.62 16 5 O -0.26 -8.45 11.05 -45.52 -0.50 -8.95 16 6 N -0.68 -15.93 10.79 37.02 0.40 -15.53 16 7 O -0.32 -15.50 9.06 -84.88 -0.77 -16.27 16 8 C 0.01 0.29 6.64 23.08 0.15 0.44 16 9 C -0.18 -8.00 8.29 22.34 0.19 -7.82 16 10 C -0.21 -8.90 10.04 22.43 0.23 -8.67 16 11 C -0.14 -6.55 9.97 22.00 0.22 -6.33 16 12 C -0.17 -9.21 8.64 22.47 0.19 -9.01 16 13 C 0.05 3.12 5.59 -21.20 -0.12 3.00 16 14 C -0.48 -28.38 8.73 23.40 0.20 -28.18 16 15 H 0.06 3.80 7.65 -2.91 -0.02 3.78 16 16 C 0.03 1.76 5.17 85.25 0.44 2.20 16 17 N -0.83 -45.74 10.88 21.83 0.24 -45.50 16 18 Si 0.98 41.64 29.59 68.60 2.03 43.67 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H 0.05 1.69 7.02 -2.39 -0.02 1.67 16 23 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.73 7.56 -2.39 -0.02 1.72 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.37 7.27 9.25 -89.70 -0.83 6.44 16 28 H 0.35 5.68 9.18 -89.69 -0.82 4.86 16 29 H 0.13 4.73 5.48 -2.91 -0.02 4.71 16 30 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.11 6.15 6.11 -2.91 -0.02 6.13 16 33 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 Total: -1.00 -69.39 280.98 3.56 -65.83 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.51 Total: 29.98 kcal Atomic # 6 Polarization: -55.92 SS G_CDS: 2.68 Total: -53.24 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.64 Total: -61.03 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.27 Total: -25.22 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.39 3.56 -65.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.428 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds