Wall clock time and date at job start Mon Mar 30 2020 17:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36004 * 116.99949 * 2 1 4 4 C 1.39189 * 120.07283 * 269.98321 * 3 2 1 5 5 O 1.35986 * 120.07722 * 0.02562 * 4 3 2 6 6 C 1.38528 * 119.85031 * 179.74723 * 4 3 2 7 7 C 1.38284 * 119.99785 * 0.54610 * 6 4 3 8 8 C 1.38204 * 120.14664 * 359.45152 * 7 6 4 9 9 C 1.38287 * 120.14866 * 0.27465 * 8 7 6 10 10 C 1.50699 * 120.00208 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.46875 * 259.99967 * 10 9 8 12 12 C 1.46500 * 119.99832 * 269.99885 * 11 10 9 13 13 C 1.36934 * 120.00367 * 89.99996 * 11 10 9 14 14 H 1.08007 * 119.99670 * 22.01654 * 13 11 10 15 15 C 1.38815 * 120.00414 * 202.01980 * 13 11 10 16 16 N 1.31619 * 119.99558 * 11.26411 * 15 13 11 17 17 Si 1.86800 * 120.00195 * 191.25990 * 15 13 11 18 18 H 1.48504 * 109.46853 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46739 * 120.00086 * 17 15 13 20 20 H 1.48492 * 109.47209 * 240.00032 * 17 15 13 21 21 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47192 * 299.99682 * 1 2 3 23 23 H 1.09003 * 109.47261 * 59.99804 * 1 2 3 24 24 H 0.96700 * 114.00403 * 90.00072 * 5 4 3 25 25 H 1.08000 * 120.00189 * 180.26777 * 6 4 3 26 26 H 1.08005 * 119.92297 * 179.72219 * 7 6 4 27 27 H 1.08004 * 119.92516 * 180.29702 * 8 7 6 28 28 H 1.09000 * 109.47254 * 19.99516 * 10 9 8 29 29 H 1.09003 * 109.47340 * 139.99826 * 10 9 8 30 30 H 1.08996 * 109.47141 * 94.68036 * 12 11 10 31 31 H 1.09000 * 109.47308 * 214.67831 * 12 11 10 32 32 H 1.08996 * 109.47150 * 334.67579 * 12 11 10 33 33 H 0.97001 * 119.99694 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 2.3633 1.8331 -1.2045 5 8 2.0559 1.2301 -2.3840 6 6 2.9875 3.0698 -1.1991 7 6 3.3044 3.6791 0.0011 8 6 2.9897 3.0621 1.1971 9 6 2.3615 1.8302 1.1988 10 6 2.0203 1.1601 2.5048 11 7 3.0271 0.1400 2.8079 12 6 2.8421 -1.2346 2.3361 13 6 4.1411 0.4712 3.5321 14 1 4.1301 1.3412 4.1721 15 6 5.2844 -0.3111 3.4438 16 7 5.3805 -1.2326 2.5090 17 14 6.6864 -0.0559 4.6515 18 1 6.3328 1.0329 5.5975 19 1 6.9223 -1.3115 5.4085 20 1 7.9182 0.3134 3.9091 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.1800 1.4570 -2.7252 25 1 3.2306 3.5561 -2.1323 26 1 3.7951 4.6412 0.0038 27 1 3.2345 3.5434 2.1324 28 1 2.0053 1.9037 3.3017 29 1 1.0395 0.6909 2.4272 30 1 3.3637 -1.3666 1.3882 31 1 3.2460 -1.9290 3.0728 32 1 1.7791 -1.4308 2.1964 33 1 6.1796 -1.7790 2.4470 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233257212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:39:55 Heat of formation + Delta-G solvation = -47.958083 kcal Electronic energy + Delta-G solvation = -17382.284411 eV Core-core repulsion = 14601.887830 eV Total energy + Delta-G solvation = -2780.396582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23292 -38.40025 -37.96223 -36.87782 -33.60777 -31.51808 -30.42992 -28.07585 -27.85681 -26.98539 -23.76644 -23.20439 -21.96419 -19.13902 -18.78706 -18.34831 -17.35245 -16.97142 -16.48154 -15.99320 -15.43768 -15.34776 -15.09570 -14.95210 -14.69011 -13.85834 -13.21336 -13.11538 -13.04888 -12.78752 -12.66947 -12.51684 -12.38304 -12.15116 -11.98789 -11.85519 -11.61673 -10.66118 -10.61089 -9.55726 -9.37831 -8.79141 -7.80524 -5.28718 0.31726 0.40069 1.45838 1.46384 1.57346 2.49973 2.65418 2.95019 3.24489 3.34828 3.88600 4.06022 4.12060 4.39585 4.43779 4.48775 4.56822 4.64173 4.76511 4.79303 4.91747 5.03551 5.08866 5.33801 5.41726 5.52664 5.64799 5.72904 5.80592 5.90295 6.32225 6.54222 6.97798 7.15196 7.86587 8.32463 9.22801 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027230 B = 0.008677 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.029377 B = 3225.990188 C = 3619.497649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.062 3.938 4 C 0.067 3.933 5 O -0.500 6.500 6 C -0.149 4.149 7 C -0.110 4.110 8 C -0.118 4.118 9 C -0.111 4.111 10 C 0.186 3.814 11 N -0.603 5.603 12 C 0.199 3.801 13 C -0.257 4.257 14 H 0.078 0.922 15 C -0.058 4.058 16 N -0.940 5.940 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.292 1.292 20 H -0.296 1.296 21 H 0.103 0.897 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.400 0.600 25 H 0.152 0.848 26 H 0.156 0.844 27 H 0.131 0.869 28 H 0.064 0.936 29 H 0.060 0.940 30 H -0.007 1.007 31 H 0.013 0.987 32 H 0.024 0.976 33 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 9.205 -5.919 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.017 3.983 4 C 0.022 3.978 5 O -0.312 6.312 6 C -0.168 4.168 7 C -0.128 4.128 8 C -0.137 4.137 9 C -0.115 4.115 10 C 0.060 3.940 11 N -0.324 5.324 12 C 0.054 3.946 13 C -0.387 4.387 14 H 0.096 0.904 15 C -0.252 4.252 16 N -0.586 5.586 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.219 1.219 20 H -0.223 1.223 21 H 0.121 0.879 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.257 0.743 25 H 0.170 0.830 26 H 0.174 0.826 27 H 0.149 0.851 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.012 0.988 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.898 8.631 -5.842 14.374 hybrid contribution 0.485 -0.086 0.238 0.547 sum -9.413 8.545 -5.605 13.894 Atomic orbital electron populations 1.23120 0.78211 1.04095 1.00956 1.86172 1.20995 1.24710 1.94381 1.19065 0.99883 0.87286 0.92080 1.18946 1.01842 0.92466 0.84540 1.84865 1.40273 1.71048 1.34983 1.21485 1.01422 0.93893 0.99980 1.21330 0.99176 1.01120 0.91131 1.21194 0.98474 0.94634 0.99374 1.21411 0.98948 0.94316 0.96826 1.19954 0.91972 0.90937 0.91092 1.44267 1.22229 1.04703 1.61187 1.20320 0.93890 0.84373 0.96054 1.19650 0.90547 1.11326 1.17200 0.90398 1.25891 0.99934 0.99698 0.99714 1.70320 1.28222 1.25591 1.34509 0.85148 0.78938 0.77566 0.78493 1.18381 1.21903 1.22299 0.87904 0.93388 0.92368 0.74258 0.83043 0.82628 0.85066 0.91753 0.92222 0.98816 0.96870 0.95794 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.84 113.37 1.23 2.03 16 2 O -0.35 -13.55 8.26 -79.75 -0.66 -14.21 16 3 C 0.06 2.43 5.71 22.57 0.13 2.56 16 4 C 0.07 2.33 6.72 22.57 0.15 2.48 16 5 O -0.50 -15.41 13.29 -79.55 -1.06 -16.46 16 6 C -0.15 -4.45 9.98 22.35 0.22 -4.23 16 7 C -0.11 -3.24 10.04 22.27 0.22 -3.01 16 8 C -0.12 -4.14 9.66 22.27 0.22 -3.92 16 9 C -0.11 -4.45 5.47 -19.79 -0.11 -4.56 16 10 C 0.19 7.83 5.50 85.63 0.47 8.30 16 11 N -0.60 -31.63 2.91 -731.31 -2.13 -33.75 16 12 C 0.20 10.71 7.94 127.77 1.01 11.73 16 13 C -0.26 -14.42 9.68 84.03 0.81 -13.61 16 14 H 0.08 4.14 7.84 -2.91 -0.02 4.12 16 15 C -0.06 -3.35 5.14 84.86 0.44 -2.92 16 16 N -0.94 -58.87 10.56 21.65 0.23 -58.64 16 17 Si 0.97 46.34 29.57 68.60 2.03 48.37 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 19 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 22 H 0.05 1.21 7.12 -2.39 -0.02 1.19 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.40 7.51 9.06 -74.06 -0.67 6.84 16 25 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 26 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.13 4.26 8.04 -2.91 -0.02 4.23 16 28 H 0.06 2.50 7.89 -2.39 -0.02 2.48 16 29 H 0.06 2.29 6.28 -2.39 -0.01 2.27 16 30 H -0.01 -0.40 7.40 -2.39 -0.02 -0.42 16 31 H 0.01 0.74 7.19 -2.39 -0.02 0.72 16 32 H 0.02 1.12 7.65 -2.39 -0.02 1.10 16 33 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -73.86 281.78 3.66 -70.20 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.44 Total: 9.64 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.80 Total: -5.15 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.90 Total: -92.40 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.72 Total: -30.67 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.86 3.66 -70.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233257212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.245 kcal (2) G-P(sol) polarization free energy of solvation -73.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds