Wall clock time and date at job start Mon Mar 30 2020 17:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 119.98485 * 2 1 4 4 C 1.38463 * 119.96975 * 180.25279 * 3 2 1 5 5 F 1.35096 * 120.02132 * 179.76707 * 4 3 2 6 6 C 1.38457 * 119.94902 * 359.74817 * 4 3 2 7 7 C 1.38199 * 119.97636 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.98787 * 180.02562 * 7 6 4 9 9 C 1.38235 * 119.98726 * 179.74614 * 2 1 3 10 10 C 1.50703 * 119.97607 * 0.02562 * 9 2 1 11 11 N 1.46500 * 109.47031 * 274.83227 * 10 9 2 12 12 C 1.46506 * 119.99833 * 95.83838 * 11 10 9 13 13 C 1.36931 * 120.00081 * 276.11050 * 11 10 9 14 14 H 1.07998 * 120.00253 * 34.33650 * 13 11 10 15 15 C 1.38820 * 120.00026 * 214.33534 * 13 11 10 16 16 N 1.31617 * 120.00015 * 6.24121 * 15 13 11 17 17 Si 1.86796 * 119.99931 * 186.24240 * 15 13 11 18 18 H 1.48497 * 109.47146 * 59.99860 * 17 15 13 19 19 H 1.48497 * 109.47079 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47182 * 300.00137 * 17 15 13 21 21 H 1.08998 * 109.47369 * 275.39820 * 1 2 3 22 22 H 1.09008 * 109.47222 * 35.39402 * 1 2 3 23 23 H 1.09002 * 109.47377 * 155.39259 * 1 2 3 24 24 H 1.08000 * 120.01224 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.01329 * 180.02562 * 6 4 3 26 26 H 1.08999 * 109.46857 * 273.45316 * 8 7 6 27 27 H 1.08996 * 109.47147 * 33.45749 * 8 7 6 28 28 H 1.08992 * 109.47161 * 153.46056 * 8 7 6 29 29 H 1.08998 * 109.47300 * 154.83412 * 10 9 2 30 30 H 1.09002 * 109.47072 * 34.83064 * 10 9 2 31 31 H 1.09003 * 109.46857 * 85.26206 * 12 11 10 32 32 H 1.09000 * 109.46863 * 205.26251 * 12 11 10 33 33 H 1.08998 * 109.46714 * 325.26669 * 12 11 10 34 34 H 0.96996 * 120.00322 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1971 0.0000 4 6 3.5823 1.1967 -0.0053 5 9 4.2585 2.3662 -0.0101 6 6 4.2732 -0.0032 -0.0053 7 6 3.5804 -1.1989 -0.0006 8 6 4.3321 -2.5050 0.0000 9 6 2.1979 -1.1973 0.0053 10 6 1.4436 -2.5019 0.0105 11 7 1.0979 -2.8606 1.3882 12 6 -0.2215 -2.5182 1.9252 13 6 2.0099 -3.5110 2.1758 14 1 3.0633 -3.2967 2.0718 15 6 1.5805 -4.4458 3.1079 16 7 0.3130 -4.7975 3.1513 17 14 2.8017 -5.2044 4.3005 18 1 3.4194 -4.1342 5.1241 19 1 2.0967 -6.1654 5.1864 20 1 3.8598 -5.9164 3.5396 21 1 -0.3634 0.0967 1.0231 22 1 -0.3634 0.8378 -0.5953 23 1 -0.3634 -0.9343 -0.4279 24 1 1.6577 2.1323 0.0004 25 1 5.3533 -0.0047 -0.0090 26 1 4.5639 -2.7913 -1.0259 27 1 5.2582 -2.3910 0.5635 28 1 3.7180 -3.2775 0.4627 29 1 2.0670 -3.2839 -0.4230 30 1 0.5316 -2.3967 -0.5773 31 1 -0.9358 -3.2971 1.6582 32 1 -0.1619 -2.4364 3.0105 33 1 -0.5483 -1.5665 1.5064 34 1 0.0128 -5.4504 3.8028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237321421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:00 Heat of formation + Delta-G solvation = -5.977245 kcal Electronic energy + Delta-G solvation = -17105.984983 eV Core-core repulsion = 14339.781617 eV Total energy + Delta-G solvation = -2766.203366 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.55213 -39.30687 -35.39710 -33.33348 -32.08393 -30.25260 -27.75320 -26.81437 -25.51388 -25.05815 -21.88335 -20.55343 -19.99835 -16.89460 -16.53028 -16.10392 -15.36566 -15.03594 -14.96188 -13.86149 -13.72662 -13.24410 -13.04106 -12.86551 -12.70174 -12.58339 -12.43822 -12.01468 -11.54475 -11.22472 -11.07144 -10.81974 -10.74197 -10.58884 -10.39269 -10.16624 -9.95635 -9.63410 -8.54092 -8.28600 -7.95651 -6.57868 -5.76563 -3.32733 1.64046 1.64463 3.36225 3.41785 3.42817 3.97200 4.49358 4.60784 5.06869 5.16884 5.34361 5.45879 5.60188 5.64867 5.76769 5.83862 5.94935 5.97282 6.05857 6.09048 6.29760 6.34534 6.49548 6.54358 6.71278 6.76593 6.85589 6.89787 7.22198 7.32089 7.41298 7.66644 7.82998 8.46266 9.23035 9.82768 10.38674 11.28513 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.008156 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.470911 B = 3432.076778 C = 3992.152403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 C -0.166 4.166 4 C 0.083 3.917 5 F -0.151 7.151 6 C -0.166 4.166 7 C -0.040 4.040 8 C -0.131 4.131 9 C -0.088 4.088 10 C 0.178 3.822 11 N -0.587 5.587 12 C 0.149 3.851 13 C -0.264 4.264 14 H 0.069 0.931 15 C 0.013 3.987 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.281 1.281 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.019 0.981 32 H 0.044 0.956 33 H 0.008 0.992 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 7.908 -7.076 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.050 4.050 3 C -0.185 4.185 4 C 0.063 3.937 5 F -0.130 7.130 6 C -0.185 4.185 7 C -0.041 4.041 8 C -0.187 4.187 9 C -0.091 4.091 10 C 0.051 3.949 11 N -0.308 5.308 12 C 0.005 3.995 13 C -0.394 4.394 14 H 0.086 0.914 15 C -0.187 4.187 16 N -0.544 5.544 17 Si 0.729 3.271 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.207 1.207 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.142 0.858 25 H 0.143 0.857 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.753 7.786 -6.936 10.784 hybrid contribution 0.867 -0.038 0.899 1.249 sum 3.620 7.748 -6.036 10.468 Atomic orbital electron populations 1.21015 0.91037 1.02542 1.02584 1.19546 0.96143 0.91643 0.97632 1.20834 0.92057 0.98903 1.06723 1.17547 0.90113 0.80861 1.05155 1.91430 1.80525 1.46670 1.94387 1.20900 1.00010 0.91094 1.06464 1.19602 0.93383 0.94474 0.96597 1.21133 1.00274 0.95531 1.01797 1.21002 0.93439 0.97633 0.97045 1.19847 0.96300 0.90399 0.88390 1.43683 1.13828 1.66117 1.07215 1.21024 0.86361 0.94187 0.97962 1.19150 0.89385 1.15369 1.15468 0.91392 1.25289 0.96088 0.96733 1.00581 1.69992 1.14007 1.33795 1.36621 0.86432 0.80674 0.78996 0.81008 1.20936 1.21589 1.20666 0.90365 0.92383 0.90511 0.85771 0.85734 0.91739 0.92143 0.87876 0.92409 0.93019 0.96230 0.93666 0.97335 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.21 36.01 0.30 -1.40 16 2 C -0.05 -0.83 5.88 -104.64 -0.62 -1.44 16 3 C -0.17 -2.68 9.70 -39.51 -0.38 -3.07 16 4 C 0.08 1.38 7.30 -39.42 -0.29 1.09 16 5 F -0.15 -2.46 17.27 2.25 0.04 -2.43 16 6 C -0.17 -2.75 9.70 -39.51 -0.38 -3.13 16 7 C -0.04 -0.70 5.88 -104.63 -0.62 -1.32 16 8 C -0.13 -2.13 8.96 36.01 0.32 -1.81 16 9 C -0.09 -1.63 5.42 -104.62 -0.57 -2.19 16 10 C 0.18 3.55 4.92 -5.19 -0.03 3.53 16 11 N -0.59 -14.13 2.88 -182.49 -0.53 -14.65 16 12 C 0.15 3.51 8.99 59.85 0.54 4.05 16 13 C -0.26 -6.95 8.89 -15.06 -0.13 -7.09 16 14 H 0.07 1.74 5.67 -52.49 -0.30 1.45 16 15 C 0.01 0.35 5.16 -17.43 -0.09 0.26 16 16 N -0.90 -25.74 11.18 55.49 0.62 -25.12 16 17 Si 0.90 21.42 29.56 -169.99 -5.02 16.39 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H 0.08 1.19 6.70 -51.93 -0.35 0.85 16 22 H 0.06 0.70 8.12 -51.92 -0.42 0.28 16 23 H 0.08 1.14 5.43 -51.93 -0.28 0.86 16 24 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 25 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.10 1.95 3.83 -51.93 -0.20 1.75 16 29 H 0.06 1.15 6.29 -51.93 -0.33 0.82 16 30 H 0.05 0.95 6.00 -51.93 -0.31 0.64 16 31 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 32 H 0.04 1.17 7.30 -51.93 -0.38 0.79 16 33 H 0.01 0.17 4.12 -51.93 -0.21 -0.05 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 273.09 15.07 4.12 4.12 Total: -1.00 -28.68 273.09 -6.72 -35.41 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.01 Total: -1.19 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.94 Total: -12.53 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.10 Total: -39.77 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.68 -6.72 -35.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237321421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.431 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds