Wall clock time and date at job start Mon Mar 30 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35676 * 116.99635 * 179.97438 * 5 4 3 7 7 C 1.38922 * 119.68320 * 179.72662 * 6 5 4 8 8 C 1.38382 * 119.11201 * 179.75588 * 7 6 5 9 9 C 1.38834 * 118.48218 * 0.51010 * 8 7 6 10 10 C 1.50698 * 120.35286 * 179.75262 * 9 8 7 11 11 C 1.50701 * 109.46993 * 269.98113 * 10 9 8 12 12 H 1.08004 * 120.00277 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00086 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99971 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47371 * 90.00239 * 15 13 11 17 17 H 1.48503 * 109.47099 * 210.00345 * 15 13 11 18 18 H 1.48506 * 109.47197 * 330.00070 * 15 13 11 19 19 C 1.38045 * 119.29294 * 359.73325 * 9 8 7 20 20 N 1.31970 * 120.82893 * 0.02562 * 19 9 8 21 21 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 22 22 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 23 23 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 24 24 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 25 25 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 26 26 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 27 27 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 28 28 H 1.07994 * 120.44273 * 0.02562 * 7 6 5 29 29 H 1.07999 * 120.76154 * 180.24344 * 8 7 6 30 30 H 1.09006 * 109.47419 * 29.98104 * 10 9 8 31 31 H 1.08999 * 109.46912 * 149.97986 * 10 9 8 32 32 H 0.96998 * 119.99971 * 179.97438 * 14 13 11 33 33 H 1.07995 * 119.58588 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3008 0.3989 -1.3809 7 6 5.7802 -0.1900 -2.5443 8 6 7.1445 -0.3637 -2.6981 9 6 7.9843 0.0500 -1.6729 10 6 9.4763 -0.1242 -1.7936 11 6 9.8725 -1.4655 -1.2325 12 1 9.1193 -2.1257 -0.8285 13 6 11.1967 -1.8496 -1.2340 14 7 11.5424 -3.0204 -0.7448 15 14 12.4996 -0.7075 -1.9322 16 1 13.0143 0.1742 -0.8539 17 1 13.6166 -1.5124 -2.4889 18 1 11.9038 0.1236 -3.0091 19 6 7.4381 0.6230 -0.5420 20 7 6.1329 0.7799 -0.4263 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.9783 2.1768 0.0902 27 1 3.8508 0.5687 0.8427 28 1 5.0977 -0.5039 -3.3201 29 1 7.5464 -0.8149 -3.5932 30 1 9.7648 -0.0699 -2.8435 31 1 9.9805 0.6658 -1.2371 32 1 12.4739 -3.2907 -0.7462 33 1 8.0870 0.9462 0.2585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:05 Heat of formation + Delta-G solvation = -54.725371 kcal Electronic energy + Delta-G solvation = -15923.880159 eV Core-core repulsion = 13143.190125 eV Total energy + Delta-G solvation = -2780.690033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11679 -38.34068 -37.23089 -33.57901 -31.96254 -31.47105 -30.20137 -27.33832 -26.47189 -23.76190 -23.27290 -22.00640 -20.66820 -18.20227 -16.94775 -16.81397 -16.52491 -15.83064 -15.27505 -15.05481 -14.77677 -14.08979 -13.88329 -13.34255 -13.00220 -12.74666 -12.47208 -12.37562 -11.95262 -11.68523 -11.52617 -11.40613 -10.79414 -10.58231 -10.29301 -10.07834 -9.90920 -9.47573 -9.18175 -9.03055 -8.61351 -7.66356 -6.10397 -4.10548 1.73130 1.92273 3.26664 3.28981 3.34852 3.36594 3.57467 4.37534 4.38418 4.79778 4.82965 5.00306 5.10382 5.14895 5.19645 5.21221 5.40941 5.49086 5.57755 5.59920 5.69093 5.75546 6.00258 6.18924 6.59646 6.75247 6.88648 6.93382 7.06678 7.32170 7.63065 7.69600 8.37518 8.46109 8.94488 9.49188 11.02485 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057178 B = 0.004229 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.585227 B = 6619.043933 C = 6705.615550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.075 3.925 5 O -0.306 6.306 6 C 0.290 3.710 7 C -0.188 4.188 8 C -0.047 4.047 9 C -0.112 4.112 10 C 0.024 3.976 11 C -0.517 4.517 12 H 0.073 0.927 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.879 3.121 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.264 1.264 19 C 0.128 3.872 20 N -0.542 5.542 21 H 0.086 0.914 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 9.799 -0.746 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.001 4.001 5 O -0.214 6.214 6 C 0.111 3.889 7 C -0.209 4.209 8 C -0.073 4.073 9 C -0.114 4.114 10 C -0.014 4.014 11 C -0.555 4.555 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.026 4.026 20 N -0.265 5.265 21 H 0.104 0.896 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.233 9.827 -0.124 19.839 hybrid contribution 0.949 0.316 -0.772 1.264 sum -16.284 10.144 -0.896 19.206 Atomic orbital electron populations 1.22743 0.81188 1.02869 0.99763 1.88008 1.19519 1.27330 1.95355 1.22657 0.92297 0.85522 1.00999 1.22519 0.91898 0.98844 0.86808 1.86217 1.18554 1.77214 1.39441 1.19644 0.83477 0.94587 0.91183 1.20949 0.96149 1.05823 0.97930 1.21345 0.91452 0.95330 0.99124 1.21106 0.99287 0.97062 0.93989 1.18674 0.86658 0.98233 0.97851 1.20946 0.93926 1.00149 1.40484 0.90875 1.25005 0.98444 0.95037 0.94720 1.69900 1.17817 1.20146 1.45785 0.86794 0.81513 0.81089 0.80033 1.20098 1.21256 1.18897 1.22268 0.88696 0.95023 0.96654 1.67226 1.05798 1.23256 1.30264 0.89578 0.94206 0.94073 0.91332 0.92388 0.90344 0.90903 0.85027 0.84452 0.95225 0.95593 0.92532 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.86 10.67 -40.09 -0.43 -5.29 16 3 C 0.06 0.66 6.32 37.16 0.23 0.89 16 4 C 0.08 1.01 5.69 37.16 0.21 1.22 16 5 O -0.31 -5.10 10.08 -23.59 -0.24 -5.34 16 6 C 0.29 5.30 7.49 -17.12 -0.13 5.17 16 7 C -0.19 -3.28 10.04 -39.28 -0.39 -3.67 16 8 C -0.05 -0.87 9.85 -39.31 -0.39 -1.26 16 9 C -0.11 -2.32 5.09 -104.47 -0.53 -2.85 16 10 C 0.02 0.54 4.19 -29.04 -0.12 0.42 16 11 C -0.52 -14.39 9.65 -34.44 -0.33 -14.72 16 12 H 0.07 2.25 7.98 -52.48 -0.42 1.83 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 15 Si 0.88 20.89 27.47 -169.99 -4.67 16.23 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 19 C 0.13 2.51 10.85 -17.56 -0.19 2.32 16 20 N -0.54 -10.28 9.22 -13.33 -0.12 -10.41 16 21 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 27 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 28 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 29 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 31 H 0.03 0.58 7.52 -51.93 -0.39 0.18 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.16 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -31.99 289.85 -5.51 -37.51 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.57 Total: -1.37 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.62 Total: -9.22 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.65 Total: -36.88 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.67 Total: -10.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.99 -5.51 -37.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.220 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds