Wall clock time and date at job start Mon Mar 30 2020 17:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35676 * 116.99635 * 179.97438 * 5 4 3 7 7 C 1.38922 * 119.68320 * 179.72662 * 6 5 4 8 8 C 1.38382 * 119.11201 * 179.75588 * 7 6 5 9 9 C 1.38834 * 118.48218 * 0.51010 * 8 7 6 10 10 C 1.50698 * 120.35286 * 179.75262 * 9 8 7 11 11 C 1.50701 * 109.46993 * 269.98113 * 10 9 8 12 12 H 1.08004 * 120.00277 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00086 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99971 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47371 * 90.00239 * 15 13 11 17 17 H 1.48503 * 109.47099 * 210.00345 * 15 13 11 18 18 H 1.48506 * 109.47197 * 330.00070 * 15 13 11 19 19 C 1.38045 * 119.29294 * 359.73325 * 9 8 7 20 20 N 1.31970 * 120.82893 * 0.02562 * 19 9 8 21 21 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 22 22 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 23 23 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 24 24 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 25 25 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 26 26 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 27 27 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 28 28 H 1.07994 * 120.44273 * 0.02562 * 7 6 5 29 29 H 1.07999 * 120.76154 * 180.24344 * 8 7 6 30 30 H 1.09006 * 109.47419 * 29.98104 * 10 9 8 31 31 H 1.08999 * 109.46912 * 149.97986 * 10 9 8 32 32 H 0.96998 * 119.99971 * 179.97438 * 14 13 11 33 33 H 1.07995 * 119.58588 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3008 0.3989 -1.3809 7 6 5.7802 -0.1900 -2.5443 8 6 7.1445 -0.3637 -2.6981 9 6 7.9843 0.0500 -1.6729 10 6 9.4763 -0.1242 -1.7936 11 6 9.8725 -1.4655 -1.2325 12 1 9.1193 -2.1257 -0.8285 13 6 11.1967 -1.8496 -1.2340 14 7 11.5424 -3.0204 -0.7448 15 14 12.4996 -0.7075 -1.9322 16 1 13.0143 0.1742 -0.8539 17 1 13.6166 -1.5124 -2.4889 18 1 11.9038 0.1236 -3.0091 19 6 7.4381 0.6230 -0.5420 20 7 6.1329 0.7799 -0.4263 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.9783 2.1768 0.0902 27 1 3.8508 0.5687 0.8427 28 1 5.0977 -0.5039 -3.3201 29 1 7.5464 -0.8149 -3.5932 30 1 9.7648 -0.0699 -2.8435 31 1 9.9805 0.6658 -1.2371 32 1 12.4739 -3.2907 -0.7462 33 1 8.0870 0.9462 0.2585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:04 Heat of formation + Delta-G solvation = -77.589802 kcal Electronic energy + Delta-G solvation = -15924.871635 eV Core-core repulsion = 13143.190125 eV Total energy + Delta-G solvation = -2781.681509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51841 -39.43123 -38.32949 -35.47153 -33.69202 -32.91394 -31.38620 -29.04823 -27.22914 -25.07341 -24.99760 -23.17608 -22.32704 -19.50092 -18.95358 -17.93506 -17.80255 -16.74501 -16.56455 -16.39945 -16.01013 -15.76473 -15.31340 -14.61098 -14.45454 -14.33253 -13.98050 -13.63732 -13.44077 -13.16003 -12.57367 -12.49249 -12.36031 -12.06447 -11.93391 -11.74520 -11.55896 -10.77635 -10.70051 -10.67783 -10.49043 -9.17631 -8.27306 -6.33455 0.27605 0.42743 1.41610 1.43082 1.54807 2.06830 2.38563 2.80429 2.89264 3.07544 3.42276 3.94812 4.08484 4.15189 4.18038 4.22220 4.32795 4.44003 4.52870 4.55497 4.59596 4.72423 4.78926 4.86568 5.06027 5.11387 5.15972 5.51462 5.63615 5.66688 6.18512 6.25492 6.34644 6.73267 6.91407 7.30496 8.89381 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057178 B = 0.004229 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.585227 B = 6619.043933 C = 6705.615550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.065 3.935 4 C 0.068 3.932 5 O -0.311 6.311 6 C 0.285 3.715 7 C -0.186 4.186 8 C -0.048 4.048 9 C -0.139 4.139 10 C 0.031 3.969 11 C -0.523 4.523 12 H 0.024 0.976 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.287 1.287 18 H -0.240 1.240 19 C 0.122 3.878 20 N -0.549 5.549 21 H 0.090 0.910 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.160 0.840 29 H 0.153 0.847 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.267 0.733 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.793 11.754 -1.693 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.011 4.011 4 C -0.007 4.007 5 O -0.219 6.219 6 C 0.106 3.894 7 C -0.206 4.206 8 C -0.073 4.073 9 C -0.142 4.142 10 C -0.007 4.007 11 C -0.560 4.560 12 H 0.042 0.958 13 C -0.190 4.190 14 N -0.592 5.592 15 Si 0.776 3.224 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.163 1.163 19 C -0.033 4.033 20 N -0.272 5.272 21 H 0.109 0.891 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.177 0.823 29 H 0.171 0.829 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.144 11.802 -1.071 21.671 hybrid contribution 1.026 -0.345 -0.412 1.158 sum -17.118 11.456 -1.483 20.651 Atomic orbital electron populations 1.22932 0.79164 1.03746 1.01189 1.87946 1.21854 1.28563 1.95686 1.22738 0.90011 0.85283 1.03044 1.22804 0.94163 0.98745 0.84999 1.86229 1.17423 1.77304 1.40962 1.19978 0.84176 0.93953 0.91249 1.21229 0.96086 1.04936 0.98350 1.21563 0.91900 0.94686 0.99180 1.21011 0.98336 0.99341 0.95487 1.18519 0.88575 0.95571 0.97990 1.21185 0.93085 1.01692 1.40086 0.95757 1.26018 1.01181 0.96741 0.95080 1.70070 1.18562 1.22672 1.47854 0.85610 0.77874 0.78867 0.80016 1.18990 1.21264 1.16291 1.22403 0.89192 0.95015 0.96642 1.67256 1.05513 1.23766 1.30710 0.89127 0.92408 0.92952 0.88291 0.91153 0.89185 0.92528 0.82273 0.82943 0.94189 0.94390 0.92386 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -10.02 10.67 -144.34 -1.54 -11.56 16 3 C 0.07 1.25 6.32 71.98 0.45 1.70 16 4 C 0.07 1.74 5.69 71.98 0.41 2.15 16 5 O -0.31 -9.95 10.08 -85.30 -0.86 -10.81 16 6 C 0.29 10.12 7.49 84.79 0.63 10.76 16 7 C -0.19 -6.18 10.04 22.47 0.23 -5.95 16 8 C -0.05 -1.73 9.85 22.45 0.22 -1.51 16 9 C -0.14 -5.69 5.09 -19.77 -0.10 -5.79 16 10 C 0.03 1.41 4.19 29.10 0.12 1.54 16 11 C -0.52 -29.61 9.65 25.60 0.25 -29.37 16 12 H 0.02 1.56 7.98 -2.91 -0.02 1.54 16 13 C 0.01 0.38 5.47 84.66 0.46 0.85 16 14 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 15 Si 0.95 42.54 27.47 68.60 1.88 44.43 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 19 C 0.12 4.74 10.85 84.63 0.92 5.65 16 20 N -0.55 -20.49 9.22 -308.95 -2.85 -23.34 16 21 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 27 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 29 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.04 1.72 7.15 -2.38 -0.02 1.70 16 31 H 0.04 1.62 7.52 -2.39 -0.02 1.60 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.16 5.87 8.06 -2.91 -0.02 5.85 16 Total: -1.00 -69.95 289.85 2.81 -67.14 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.03 Total: 11.42 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.84 Total: -18.34 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -2.55 Total: -82.27 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -2.40 Total: -22.37 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.43 kcal Total: -69.95 2.81 -67.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.447 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds