Wall clock time and date at job start Mon Mar 30 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 O 1.42897 * 109.47079 * 75.00148 * 3 2 1 5 5 C 1.35681 * 117.00263 * 74.99977 * 4 3 2 6 6 C 1.38914 * 119.68381 * 179.97438 * 5 4 3 7 7 C 1.38381 * 119.11288 * 179.97438 * 6 5 4 8 8 C 1.38834 * 118.47948 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.35130 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47238 * 90.00037 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99907 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99986 * 15 13 11 17 17 H 1.48502 * 109.46769 * 209.99494 * 15 13 11 18 18 H 1.48495 * 109.47280 * 329.99669 * 15 13 11 19 19 C 1.38039 * 119.29144 * 0.25007 * 8 7 6 20 20 N 1.31964 * 120.83680 * 359.45709 * 19 8 7 21 21 H 1.09006 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47488 * 299.99912 * 1 2 3 23 23 H 1.09005 * 109.47439 * 60.00185 * 1 2 3 24 24 H 1.08996 * 109.47365 * 315.00201 * 3 2 1 25 25 H 1.09003 * 109.47620 * 195.00043 * 3 2 1 26 26 H 1.07995 * 120.44918 * 359.97438 * 6 5 4 27 27 H 1.07996 * 120.76435 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.46953 * 209.99649 * 9 8 7 29 29 H 1.09000 * 109.47318 * 329.99247 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99686 * 10 9 8 31 31 H 1.09004 * 109.47261 * 59.99705 * 10 9 8 32 32 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.58576 * 179.72422 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7174 1.4138 2.2653 6 6 2.6442 1.9359 3.5505 7 6 3.4979 1.4490 4.5246 8 6 4.3996 0.4523 4.1766 9 6 5.3493 -0.1081 5.2039 10 6 4.6968 -1.3019 5.9040 11 6 5.6467 -1.8626 6.9308 12 1 6.6183 -1.4123 7.0705 13 6 5.2748 -2.9499 7.6929 14 7 6.1036 -3.4389 8.5893 15 14 3.5939 -3.7283 7.4518 16 1 3.6853 -4.7948 6.4224 17 1 3.1325 -4.3170 8.7347 18 1 2.6278 -2.6922 7.0067 19 6 4.4210 -0.0158 2.8782 20 7 3.5902 0.4645 1.9723 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.4941 1.9329 -0.7266 25 1 3.0648 1.2337 -0.2660 26 1 1.9305 2.7114 3.7864 27 1 3.4637 1.8353 5.5325 28 1 6.2665 -0.4321 4.7123 29 1 5.5837 0.6611 5.9398 30 1 3.7796 -0.9778 6.3957 31 1 4.4624 -2.0710 5.1681 32 1 5.8421 -4.2041 9.1251 33 1 5.1236 -0.7878 2.6011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:09 Heat of formation + Delta-G solvation = -62.556392 kcal Electronic energy + Delta-G solvation = -16194.121301 eV Core-core repulsion = 13413.091689 eV Total energy + Delta-G solvation = -2781.029612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50667 -38.67090 -36.63731 -34.24087 -32.39969 -31.69527 -29.27555 -27.73382 -25.80908 -24.87070 -23.16092 -22.05513 -20.22557 -18.57265 -17.22847 -17.01607 -16.84463 -15.69557 -15.18125 -14.75610 -14.45975 -14.18019 -14.00726 -13.69983 -12.99817 -12.82468 -12.77960 -12.44312 -11.87285 -11.71603 -11.35488 -11.12843 -10.99139 -10.39806 -10.22557 -10.05183 -9.76043 -9.52038 -9.30430 -9.16314 -8.54839 -8.07428 -6.05879 -4.04339 1.39727 1.55096 3.07080 3.31269 3.38677 3.43299 3.64637 4.06337 4.44773 4.51012 4.78608 5.08166 5.16222 5.19242 5.23223 5.28559 5.31623 5.33648 5.51860 5.57640 5.80398 6.16855 6.22500 6.42462 6.52875 6.66903 6.75704 6.88607 7.25488 7.35895 7.39374 7.76475 8.09256 8.50976 8.98711 9.56751 11.07407 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.005293 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.216536 B = 5288.685575 C = 5745.909658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.382 6.382 3 C 0.226 3.774 4 O -0.330 6.330 5 C 0.299 3.701 6 C -0.187 4.187 7 C -0.047 4.047 8 C -0.144 4.144 9 C -0.062 4.062 10 C -0.007 4.007 11 C -0.522 4.522 12 H 0.073 0.927 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.133 3.867 20 N -0.526 5.526 21 H 0.085 0.915 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 10.863 -15.451 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.301 6.301 3 C 0.112 3.888 4 O -0.240 6.240 5 C 0.120 3.880 6 C -0.208 4.208 7 C -0.073 4.073 8 C -0.146 4.146 9 C -0.100 4.100 10 C -0.044 4.044 11 C -0.560 4.560 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.022 4.022 20 N -0.248 5.248 21 H 0.104 0.896 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.158 0.842 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.647 10.424 -16.176 21.526 hybrid contribution -1.070 -0.164 0.681 1.279 sum -10.717 10.259 -15.495 21.453 Atomic orbital electron populations 1.22821 0.81128 1.02922 1.00103 1.88164 1.20058 1.28468 1.93411 1.23984 1.00140 0.82840 0.81806 1.86352 1.56672 1.60220 1.20804 1.19609 0.89445 0.91258 0.87663 1.21015 1.03927 1.04829 0.91024 1.21388 0.92552 0.94255 0.99069 1.21265 0.99507 0.97222 0.96655 1.20519 0.95924 0.98886 0.94676 1.19572 0.96617 0.92714 0.95539 1.21133 1.02569 1.14032 1.18287 0.90847 1.25004 0.96931 0.96592 0.94764 1.69910 1.36024 1.24756 1.23467 0.86812 0.85239 0.79934 0.77545 1.20225 1.21349 1.19040 1.22365 0.94693 0.96767 0.88406 1.67261 1.07153 1.12218 1.38143 0.89619 0.93546 0.94009 0.88562 0.87612 0.84757 0.84173 0.91311 0.91412 0.96558 0.96890 0.92699 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.89 101.05 1.10 1.37 16 2 O -0.38 -5.09 10.75 -59.04 -0.63 -5.72 16 3 C 0.23 2.58 6.67 101.05 0.67 3.26 16 4 O -0.33 -4.55 10.17 -42.56 -0.43 -4.98 16 5 C 0.30 4.67 7.40 -17.12 -0.13 4.54 16 6 C -0.19 -2.71 10.04 -39.28 -0.39 -3.10 16 7 C -0.05 -0.72 9.85 -39.31 -0.39 -1.10 16 8 C -0.14 -2.45 5.15 -104.47 -0.54 -2.98 16 9 C -0.06 -1.18 5.31 -27.88 -0.15 -1.33 16 10 C -0.01 -0.17 4.02 -27.89 -0.11 -0.28 16 11 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 15 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C 0.13 2.21 10.85 -17.57 -0.19 2.01 16 20 N -0.53 -8.76 8.84 -13.33 -0.12 -8.87 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.48 8.03 -51.93 -0.42 0.06 16 23 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 24 H 0.10 0.75 8.01 -51.93 -0.42 0.34 16 25 H 0.11 1.21 7.58 -51.93 -0.39 0.82 16 26 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 29 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.16 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 288.57 15.07 4.35 4.35 Total: -1.00 -32.42 288.57 -5.82 -38.24 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.53 Total: -2.54 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.55 Total: -10.75 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.66 Total: -35.85 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.07 Total: -10.70 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.42 -5.82 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.313 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds