Wall clock time and date at job start Mon Mar 30 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00006 * 2 1 4 4 O 1.42897 * 109.47079 * 75.00148 * 3 2 1 5 5 C 1.35681 * 117.00263 * 74.99977 * 4 3 2 6 6 C 1.38914 * 119.68381 * 179.97438 * 5 4 3 7 7 C 1.38381 * 119.11288 * 179.97438 * 6 5 4 8 8 C 1.38834 * 118.47948 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.35130 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47238 * 90.00037 * 9 8 7 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00290 * 0.02562 * 11 10 9 13 13 C 1.37887 * 120.00079 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99907 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99654 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99986 * 15 13 11 17 17 H 1.48502 * 109.46769 * 209.99494 * 15 13 11 18 18 H 1.48495 * 109.47280 * 329.99669 * 15 13 11 19 19 C 1.38039 * 119.29144 * 0.25007 * 8 7 6 20 20 N 1.31964 * 120.83680 * 359.45709 * 19 8 7 21 21 H 1.09006 * 109.47084 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47488 * 299.99912 * 1 2 3 23 23 H 1.09005 * 109.47439 * 60.00185 * 1 2 3 24 24 H 1.08996 * 109.47365 * 315.00201 * 3 2 1 25 25 H 1.09003 * 109.47620 * 195.00043 * 3 2 1 26 26 H 1.07995 * 120.44918 * 359.97438 * 6 5 4 27 27 H 1.07996 * 120.76435 * 180.02562 * 7 6 5 28 28 H 1.09001 * 109.46953 * 209.99649 * 9 8 7 29 29 H 1.09000 * 109.47318 * 329.99247 * 9 8 7 30 30 H 1.09001 * 109.46832 * 299.99686 * 10 9 8 31 31 H 1.09004 * 109.47261 * 59.99705 * 10 9 8 32 32 H 0.96999 * 119.99682 * 180.02562 * 14 13 11 33 33 H 1.08005 * 119.58576 * 179.72422 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7174 1.4138 2.2653 6 6 2.6442 1.9359 3.5505 7 6 3.4979 1.4490 4.5246 8 6 4.3996 0.4523 4.1766 9 6 5.3493 -0.1081 5.2039 10 6 4.6968 -1.3019 5.9040 11 6 5.6467 -1.8626 6.9308 12 1 6.6183 -1.4123 7.0705 13 6 5.2748 -2.9499 7.6929 14 7 6.1036 -3.4389 8.5893 15 14 3.5939 -3.7283 7.4518 16 1 3.6853 -4.7948 6.4224 17 1 3.1325 -4.3170 8.7347 18 1 2.6278 -2.6922 7.0067 19 6 4.4210 -0.0158 2.8782 20 7 3.5902 0.4645 1.9723 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.4941 1.9329 -0.7266 25 1 3.0648 1.2337 -0.2660 26 1 1.9305 2.7114 3.7864 27 1 3.4637 1.8353 5.5325 28 1 6.2665 -0.4321 4.7123 29 1 5.5837 0.6611 5.9398 30 1 3.7796 -0.9778 6.3957 31 1 4.4624 -2.0710 5.1681 32 1 5.8421 -4.2041 9.1251 33 1 5.1236 -0.7878 2.6011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:09 Heat of formation + Delta-G solvation = -84.763563 kcal Electronic energy + Delta-G solvation = -16195.084276 eV Core-core repulsion = 13413.091689 eV Total energy + Delta-G solvation = -2781.992587 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.64330 -39.70989 -37.64481 -35.95168 -34.19491 -33.05151 -30.86080 -28.60499 -27.18448 -26.11433 -24.34714 -23.53974 -21.87417 -19.62253 -18.98680 -18.31968 -17.94177 -16.63771 -16.39402 -16.23388 -15.93946 -15.48873 -15.17900 -14.85887 -14.73070 -14.40159 -14.01732 -13.72126 -13.51286 -12.95580 -12.84941 -12.52019 -12.07147 -11.93587 -11.85332 -11.66528 -11.32819 -11.22494 -10.78458 -10.72460 -10.46608 -9.32958 -8.28969 -6.32244 0.20507 0.34198 1.35263 1.36401 1.48062 2.07198 2.35552 2.73643 2.94693 3.06889 3.37739 3.93644 4.03770 4.06013 4.11744 4.29613 4.39019 4.46744 4.52150 4.59671 4.74220 4.80192 4.84242 4.95569 5.08712 5.29932 5.40720 5.51635 5.64305 5.67069 5.90547 6.28949 6.30734 6.76039 6.89132 7.32565 8.87667 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.005293 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.216536 B = 5288.685575 C = 5745.909658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.411 6.411 3 C 0.219 3.781 4 O -0.330 6.330 5 C 0.292 3.708 6 C -0.184 4.184 7 C -0.046 4.046 8 C -0.160 4.160 9 C -0.050 4.050 10 C -0.003 4.003 11 C -0.530 4.530 12 H 0.039 0.961 13 C 0.009 3.991 14 N -0.949 5.949 15 Si 0.943 3.057 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.251 1.251 19 C 0.126 3.874 20 N -0.540 5.540 21 H 0.090 0.910 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.137 0.863 25 H 0.100 0.900 26 H 0.163 0.837 27 H 0.159 0.841 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.266 0.734 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 11.814 -16.790 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.331 6.331 3 C 0.106 3.894 4 O -0.240 6.240 5 C 0.113 3.887 6 C -0.204 4.204 7 C -0.071 4.071 8 C -0.162 4.162 9 C -0.088 4.088 10 C -0.040 4.040 11 C -0.568 4.568 12 H 0.058 0.942 13 C -0.188 4.188 14 N -0.590 5.590 15 Si 0.767 3.233 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.175 1.175 19 C -0.029 4.029 20 N -0.263 5.263 21 H 0.108 0.892 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.154 0.846 25 H 0.118 0.882 26 H 0.180 0.820 27 H 0.176 0.824 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.881 11.392 -17.536 24.051 hybrid contribution -0.355 -0.394 1.029 1.158 sum -12.236 10.999 -16.507 23.306 Atomic orbital electron populations 1.22978 0.79610 1.03650 1.01115 1.88121 1.21879 1.29601 1.93468 1.24343 1.00614 0.83093 0.81326 1.86369 1.56060 1.60181 1.21420 1.19970 0.89191 0.90839 0.88654 1.21307 1.03888 1.04961 0.90285 1.21635 0.91802 0.93456 1.00196 1.21035 1.00230 0.98728 0.96231 1.20266 0.96163 0.97315 0.95079 1.19487 0.95727 0.94308 0.94517 1.21501 1.02175 1.13864 1.19218 0.94219 1.25913 1.01059 0.97356 0.94495 1.70053 1.38370 1.25718 1.24893 0.85756 0.80448 0.79291 0.77759 1.19489 1.20806 1.17486 1.22492 0.94971 0.97021 0.88453 1.67289 1.07688 1.12992 1.38296 0.89175 0.94190 0.91267 0.84589 0.88192 0.81977 0.82353 0.91384 0.91139 0.96408 0.96897 0.92497 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.89 113.37 1.23 1.63 16 2 O -0.41 -10.18 10.75 -126.21 -1.36 -11.54 16 3 C 0.22 4.51 6.67 113.37 0.76 5.26 16 4 O -0.33 -8.28 10.17 -67.22 -0.68 -8.97 16 5 C 0.29 8.51 7.40 84.79 0.63 9.14 16 6 C -0.18 -4.81 10.04 22.47 0.23 -4.58 16 7 C -0.05 -1.28 9.85 22.45 0.22 -1.06 16 8 C -0.16 -5.20 5.15 -19.77 -0.10 -5.30 16 9 C -0.05 -1.88 5.31 29.85 0.16 -1.72 16 10 C 0.00 -0.14 4.02 29.85 0.12 -0.02 16 11 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 12 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 13 C 0.01 0.51 5.47 84.66 0.46 0.97 16 14 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 15 Si 0.94 44.85 27.47 68.60 1.88 46.73 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 18 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 19 C 0.13 4.03 10.85 84.63 0.92 4.95 16 20 N -0.54 -17.24 8.84 -308.95 -2.73 -19.97 16 21 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.04 0.74 8.03 -2.39 -0.02 0.72 16 23 H 0.07 0.81 8.11 -2.38 -0.02 0.79 16 24 H 0.14 1.66 8.01 -2.39 -0.02 1.64 16 25 H 0.10 2.14 7.58 -2.39 -0.02 2.12 16 26 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 29 H 0.07 2.56 8.09 -2.39 -0.02 2.54 16 30 H 0.02 0.81 7.20 -2.39 -0.02 0.80 16 31 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.17 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -69.49 288.57 3.31 -66.18 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.03 Total: 7.43 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.87 Total: -20.67 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -2.43 Total: -79.16 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -2.04 Total: -20.51 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.73 kcal Total: -69.49 3.31 -66.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.583 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds