Wall clock time and date at job start Mon Mar 30 2020 17:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35995 * 117.00352 * 2 1 4 4 C 1.38798 * 120.48660 * 0.02682 * 3 2 1 5 5 C 1.38782 * 118.43345 * 179.97438 * 4 3 2 6 6 C 1.50703 * 120.33059 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47154 * 90.00382 * 6 5 4 8 8 C 1.50693 * 109.47156 * 179.97438 * 7 6 5 9 9 H 1.07994 * 120.00291 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00031 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00064 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47082 * 90.00279 * 12 10 8 14 14 H 1.48498 * 109.47510 * 210.00129 * 12 10 8 15 15 H 1.48497 * 109.47210 * 330.00340 * 12 10 8 16 16 C 1.38044 * 119.33531 * 0.02562 * 5 4 3 17 17 N 1.32004 * 120.93692 * 359.71926 * 16 5 4 18 18 C 1.32159 * 121.69690 * 0.56878 * 17 16 5 19 19 O 1.35764 * 119.71116 * 179.70731 * 18 17 16 20 20 C 1.42893 * 117.00132 * 359.73107 * 19 18 17 21 21 H 1.09004 * 109.47633 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46866 * 299.99817 * 1 2 3 23 23 H 1.09005 * 109.47475 * 59.99453 * 1 2 3 24 24 H 1.08000 * 120.78386 * 359.95211 * 4 3 2 25 25 H 1.09003 * 109.47008 * 209.99967 * 6 5 4 26 26 H 1.08995 * 109.47572 * 330.00263 * 6 5 4 27 27 H 1.09003 * 109.46824 * 299.99697 * 7 6 5 28 28 H 1.09000 * 109.47416 * 59.99362 * 7 6 5 29 29 H 0.96995 * 120.00389 * 180.02562 * 11 10 8 30 30 H 1.07996 * 119.53295 * 180.02562 * 16 5 4 31 31 H 1.08996 * 109.47255 * 299.99785 * 20 19 18 32 32 H 1.08996 * 109.47362 * 60.00124 * 20 19 18 33 33 H 1.09005 * 109.47515 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.3005 2.3822 0.0006 5 6 1.9745 3.5953 0.0011 6 6 1.2071 4.8923 0.0023 7 6 0.9481 5.3303 1.4452 8 6 0.1813 6.6276 1.4464 9 1 -0.0935 7.0933 0.5116 10 6 -0.1696 7.2199 2.6410 11 7 0.1645 6.6525 3.7795 12 14 -1.1195 8.8283 2.6425 13 1 -2.5768 8.5425 2.6420 14 1 -0.7688 9.6093 3.8559 15 1 -0.7683 9.6118 1.4310 16 6 3.3549 3.6020 0.0005 17 7 4.0391 2.4731 0.0050 18 6 3.4373 1.2965 -0.0010 19 8 4.1808 0.1605 -0.0020 20 6 5.6014 0.3149 -0.0025 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.2210 2.3496 0.0002 25 1 1.7878 5.6586 -0.5113 26 1 0.2559 4.7522 -0.5112 27 1 0.3673 4.5641 1.9588 28 1 1.8993 5.4704 1.9587 29 1 -0.0826 7.0690 4.6199 30 1 3.8827 4.5443 0.0013 31 1 5.9067 0.8655 -0.8922 32 1 5.9074 0.8643 0.8877 33 1 6.0737 -0.6675 -0.0028 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:12 Heat of formation + Delta-G solvation = -52.440811 kcal Electronic energy + Delta-G solvation = -16354.236998 eV Core-core repulsion = 13573.646030 eV Total energy + Delta-G solvation = -2780.590967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67787 -38.31754 -37.61190 -34.22590 -32.33636 -30.82187 -29.20448 -27.29324 -27.05068 -25.00005 -22.65541 -22.35513 -20.44547 -18.27335 -17.38142 -17.09587 -16.32651 -16.11825 -15.17481 -14.83717 -14.52901 -14.27788 -13.64973 -13.35306 -13.13420 -12.75170 -12.40409 -12.06542 -11.80212 -11.47112 -11.32168 -11.22625 -10.96758 -10.84055 -10.61752 -10.01050 -9.82979 -9.47091 -9.15163 -8.93192 -8.39862 -7.61679 -6.04320 -4.08080 1.46725 1.53541 3.18241 3.29089 3.35866 3.38763 3.41416 4.03025 4.42227 4.67278 4.96052 5.15276 5.22055 5.27564 5.31414 5.37607 5.38422 5.42263 5.53388 5.58086 5.71903 6.16278 6.17777 6.50911 6.60903 6.71026 6.96242 7.08869 7.60491 7.61261 7.72722 7.94268 8.11252 8.34184 8.98887 9.56527 11.06630 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034156 B = 0.005255 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.580952 B = 5327.046677 C = 5770.840939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.063 3.937 4 C -0.135 4.135 5 C -0.100 4.100 6 C -0.072 4.072 7 C 0.029 3.971 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.094 3.906 17 N -0.503 5.503 18 C 0.276 3.724 19 O -0.304 6.304 20 C 0.042 3.958 21 H 0.099 0.901 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.145 0.855 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.162 0.838 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -11.444 -8.135 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.015 3.985 4 C -0.161 4.161 5 C -0.102 4.102 6 C -0.110 4.110 7 C -0.008 4.008 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.060 4.060 17 N -0.226 5.226 18 C 0.095 3.905 19 O -0.212 6.212 20 C -0.053 4.053 21 H 0.117 0.883 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.163 0.837 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.179 0.821 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.137 -11.878 -7.935 15.180 hybrid contribution -1.461 1.169 0.233 1.885 sum 3.675 -10.710 -7.702 13.694 Atomic orbital electron populations 1.23085 0.78566 1.03777 1.01648 1.86138 1.21035 1.25536 1.89185 1.18910 0.89714 0.85814 1.04027 1.21473 1.00734 0.90622 1.03309 1.21072 0.94809 0.96659 0.97640 1.20761 0.97782 0.90500 1.02002 1.19095 0.97145 0.96040 0.88513 1.21225 1.35625 1.06956 0.92396 0.92489 1.25024 0.96057 0.97636 0.95635 1.69967 1.46541 1.39454 0.97315 0.86584 0.80173 0.83620 0.77576 1.20669 1.21205 1.19801 1.22229 0.91092 0.94728 0.97970 1.67345 1.40131 0.97594 1.17554 1.18979 0.85972 0.85816 0.99710 1.86278 1.19579 1.26515 1.88827 1.22769 0.78043 1.02308 1.02206 0.88301 0.92346 0.92704 0.83746 0.91571 0.91973 0.96543 0.96273 0.92917 0.82111 0.92675 0.92535 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.83 101.05 0.99 1.27 16 2 O -0.31 -4.76 10.29 -34.12 -0.35 -5.11 16 3 C 0.06 1.07 6.72 -38.96 -0.26 0.81 16 4 C -0.14 -2.27 8.82 -39.17 -0.35 -2.62 16 5 C -0.10 -1.79 5.15 -104.49 -0.54 -2.33 16 6 C -0.07 -1.42 5.30 -27.88 -0.15 -1.57 16 7 C 0.03 0.73 4.95 -27.89 -0.14 0.59 16 8 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 9 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 12 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 C 0.09 1.64 10.84 -17.55 -0.19 1.45 16 17 N -0.50 -8.81 9.22 -13.21 -0.12 -8.93 16 18 C 0.28 4.85 7.50 -17.00 -0.13 4.72 16 19 O -0.30 -4.93 10.27 -33.39 -0.34 -5.28 16 20 C 0.04 0.51 10.38 101.05 1.05 1.56 16 21 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 23 H 0.05 0.55 7.70 -51.93 -0.40 0.15 16 24 H 0.14 2.15 6.44 -52.49 -0.34 1.81 16 25 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 26 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 31 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 32 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 288.92 15.07 4.35 4.35 Total: -1.00 -31.68 288.92 -5.34 -37.02 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.47 Total: -3.15 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.12 Total: -9.27 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.61 Total: -34.77 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.69 Total: -10.39 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.68 -5.34 -37.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.423 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds