Wall clock time and date at job start Mon Mar 30 2020 17:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 117.00393 * 2 1 4 4 N 1.32170 * 119.71100 * 0.22546 * 3 2 1 5 5 C 1.31999 * 121.69761 * 180.26792 * 4 3 2 6 6 C 1.38054 * 120.93841 * 359.77199 * 5 4 3 7 7 C 1.50693 * 120.33247 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47135 * 270.02011 * 7 6 5 9 9 C 1.52998 * 109.47045 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00343 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00280 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99766 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00306 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47191 * 59.99732 * 14 12 10 16 16 H 1.48496 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47146 * 300.00051 * 14 12 10 18 18 C 1.38781 * 119.33268 * 359.97438 * 6 5 4 19 19 C 1.38801 * 118.43470 * 0.02562 * 18 6 5 20 20 O 1.36005 * 120.48437 * 179.97438 * 19 18 6 21 21 H 1.09007 * 109.46976 * 299.99872 * 1 2 3 22 22 H 1.09002 * 109.47064 * 59.99847 * 1 2 3 23 23 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.52722 * 179.74431 * 5 4 3 25 25 H 1.09002 * 109.47241 * 30.01712 * 7 6 5 26 26 H 1.09005 * 109.47211 * 150.01848 * 7 6 5 27 27 H 1.09002 * 109.46811 * 299.99964 * 8 7 6 28 28 H 1.08988 * 109.47039 * 59.99743 * 8 7 6 29 29 H 1.08994 * 109.47105 * 299.99886 * 9 8 7 30 30 H 1.09005 * 109.47292 * 59.99842 * 9 8 7 31 31 H 0.96994 * 119.99820 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.77674 * 180.02562 * 18 6 5 33 33 H 0.96701 * 113.99782 * 90.00793 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.3201 2.3145 0.0045 5 6 1.8783 3.5106 -0.0006 6 6 3.2514 3.6531 -0.0061 7 6 3.8742 5.0253 -0.0125 8 6 4.0791 5.4857 -1.4571 9 6 4.7119 6.8786 -1.4635 10 6 4.9143 7.3319 -2.8864 11 1 4.6205 6.6907 -3.7044 12 6 5.4746 8.5651 -3.1441 13 7 5.8319 9.3461 -2.1481 14 14 5.7247 9.1272 -4.9079 15 1 4.4131 9.1768 -5.6024 16 1 6.3391 10.4791 -4.9142 17 1 6.6203 8.1726 -5.6093 18 6 4.0525 2.5198 -0.0059 19 6 3.4373 1.2756 -0.0005 20 8 4.1821 0.1376 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.2518 4.3903 -0.0008 25 1 3.2160 5.7254 0.5021 26 1 4.8369 4.9898 0.4976 27 1 4.7373 4.7856 -1.9717 28 1 3.1165 5.5212 -1.9671 29 1 4.0542 7.5789 -0.9489 30 1 5.6747 6.8427 -0.9536 31 1 6.2257 10.2137 -2.3294 32 1 5.1292 2.6041 -0.0097 33 1 4.4007 -0.1894 0.8829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:15 Heat of formation + Delta-G solvation = -65.994910 kcal Electronic energy + Delta-G solvation = -15977.269840 eV Core-core repulsion = 13196.091122 eV Total energy + Delta-G solvation = -2781.178717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83034 -38.13957 -37.33091 -34.86896 -32.82199 -31.16078 -29.94878 -27.73268 -26.42993 -23.80461 -23.39667 -21.67048 -20.13005 -18.53708 -18.11117 -17.30229 -16.31090 -16.08237 -14.94407 -14.76178 -14.56642 -14.43123 -13.82799 -13.50079 -13.18930 -12.64353 -12.27807 -12.08179 -11.88338 -11.58119 -11.20963 -11.11665 -10.76581 -10.69960 -10.55321 -9.76583 -9.70916 -9.60640 -9.26463 -9.07803 -8.34453 -8.15882 -5.99924 -4.02203 1.02171 1.25082 2.99188 3.33983 3.38155 3.41085 3.62525 4.01377 4.39428 4.46525 4.88460 5.03841 5.10900 5.19275 5.25206 5.34100 5.36218 5.49713 5.81152 5.86865 6.01044 6.19414 6.24278 6.48386 6.72688 6.84503 7.03711 7.10563 7.52262 7.67023 7.80796 7.81463 8.00081 8.42982 9.04763 9.61970 11.11314 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042748 B = 0.004163 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.840278 B = 6723.804845 C = 6801.011527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.282 3.718 4 N -0.524 5.524 5 C 0.128 3.872 6 C -0.133 4.133 7 C -0.076 4.076 8 C -0.105 4.105 9 C 0.021 3.979 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.068 4.068 19 C 0.038 3.962 20 O -0.481 6.481 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.164 0.836 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.148 0.852 33 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 -15.967 7.793 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.102 3.898 4 N -0.248 5.248 5 C -0.027 4.027 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.143 4.143 9 C -0.016 4.016 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.094 4.094 19 C -0.009 4.009 20 O -0.289 6.289 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.181 0.819 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.166 0.834 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.176 -16.113 7.222 19.458 hybrid contribution 0.848 0.504 -0.508 1.110 sum -7.328 -15.609 6.713 18.504 Atomic orbital electron populations 1.22833 0.77669 1.02639 1.02409 1.86284 1.22483 1.24267 1.88133 1.20305 0.88834 0.85280 0.95409 1.67335 1.40178 0.98598 1.18661 1.22392 0.92631 0.93363 0.94281 1.21024 0.94231 0.97160 1.01128 1.20706 1.00369 0.90104 1.00269 1.21666 1.00521 0.99955 0.92121 1.19114 0.95735 0.89772 0.96997 1.21232 1.40480 1.01693 0.92595 0.92786 1.25018 0.95613 0.96760 0.97016 1.69951 1.42488 1.10345 1.30791 0.86667 0.78459 0.77749 0.85192 1.20244 1.21280 1.20245 1.21726 1.01457 0.90031 0.96189 1.18357 0.86665 0.87213 1.08692 1.84920 1.71459 1.39362 1.33119 0.92463 0.92347 0.88862 0.81909 0.90804 0.91018 0.93287 0.93203 0.96484 0.96543 0.92956 0.83446 0.76034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.30 -4.08 10.27 -33.38 -0.34 -4.42 16 3 C 0.28 4.09 7.50 -17.00 -0.13 3.96 16 4 N -0.52 -7.63 9.22 -13.21 -0.12 -7.75 16 5 C 0.13 1.79 10.84 -17.55 -0.19 1.60 16 6 C -0.13 -1.91 5.15 -104.49 -0.54 -2.45 16 7 C -0.08 -1.20 5.36 -27.88 -0.15 -1.35 16 8 C -0.10 -2.09 5.14 -26.73 -0.14 -2.23 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.07 -0.93 9.80 -39.17 -0.38 -1.32 16 19 C 0.04 0.53 6.75 -38.96 -0.26 0.27 16 20 O -0.48 -5.91 13.32 -34.14 -0.45 -6.37 16 21 H 0.06 0.55 8.10 -51.93 -0.42 0.12 16 22 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 25 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 26 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.99 8.14 -51.94 -0.42 0.57 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.38 2.77 9.06 45.56 0.41 3.18 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -32.58 291.76 -5.87 -38.45 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.77 Total: -1.70 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.29 Total: -13.22 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.61 Total: -33.84 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.80 Total: -10.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.58 -5.87 -38.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.544 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds