Wall clock time and date at job start Mon Mar 30 2020 17:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35762 * 117.00393 * 2 1 4 4 N 1.32170 * 119.71100 * 0.22546 * 3 2 1 5 5 C 1.31999 * 121.69761 * 180.26792 * 4 3 2 6 6 C 1.38054 * 120.93841 * 359.77199 * 5 4 3 7 7 C 1.50693 * 120.33247 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47135 * 270.02011 * 7 6 5 9 9 C 1.52998 * 109.47045 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46972 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00343 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00280 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99766 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00306 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47191 * 59.99732 * 14 12 10 16 16 H 1.48496 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47146 * 300.00051 * 14 12 10 18 18 C 1.38781 * 119.33268 * 359.97438 * 6 5 4 19 19 C 1.38801 * 118.43470 * 0.02562 * 18 6 5 20 20 O 1.36005 * 120.48437 * 179.97438 * 19 18 6 21 21 H 1.09007 * 109.46976 * 299.99872 * 1 2 3 22 22 H 1.09002 * 109.47064 * 59.99847 * 1 2 3 23 23 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.52722 * 179.74431 * 5 4 3 25 25 H 1.09002 * 109.47241 * 30.01712 * 7 6 5 26 26 H 1.09005 * 109.47211 * 150.01848 * 7 6 5 27 27 H 1.09002 * 109.46811 * 299.99964 * 8 7 6 28 28 H 1.08988 * 109.47039 * 59.99743 * 8 7 6 29 29 H 1.08994 * 109.47105 * 299.99886 * 9 8 7 30 30 H 1.09005 * 109.47292 * 59.99842 * 9 8 7 31 31 H 0.96994 * 119.99820 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.77674 * 180.02562 * 18 6 5 33 33 H 0.96701 * 113.99782 * 90.00793 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.3201 2.3145 0.0045 5 6 1.8783 3.5106 -0.0006 6 6 3.2514 3.6531 -0.0061 7 6 3.8742 5.0253 -0.0125 8 6 4.0791 5.4857 -1.4571 9 6 4.7119 6.8786 -1.4635 10 6 4.9143 7.3319 -2.8864 11 1 4.6205 6.6907 -3.7044 12 6 5.4746 8.5651 -3.1441 13 7 5.8319 9.3461 -2.1481 14 14 5.7247 9.1272 -4.9079 15 1 4.4131 9.1768 -5.6024 16 1 6.3391 10.4791 -4.9142 17 1 6.6203 8.1726 -5.6093 18 6 4.0525 2.5198 -0.0059 19 6 3.4373 1.2756 -0.0005 20 8 4.1821 0.1376 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.2518 4.3903 -0.0008 25 1 3.2160 5.7254 0.5021 26 1 4.8369 4.9898 0.4976 27 1 4.7373 4.7856 -1.9717 28 1 3.1165 5.5212 -1.9671 29 1 4.0542 7.5789 -0.9489 30 1 5.6747 6.8427 -0.9536 31 1 6.2257 10.2137 -2.3294 32 1 5.1292 2.6041 -0.0097 33 1 4.4007 -0.1894 0.8829 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:15 Heat of formation + Delta-G solvation = -89.228841 kcal Electronic energy + Delta-G solvation = -15978.277338 eV Core-core repulsion = 13196.091122 eV Total energy + Delta-G solvation = -2782.186216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.86563 -39.14631 -38.31915 -36.45711 -34.64359 -32.56767 -31.20315 -28.94038 -27.78433 -25.46082 -24.42345 -23.05149 -21.76278 -19.53536 -19.11900 -18.44996 -18.29910 -17.10586 -16.54545 -15.94808 -15.76187 -15.62596 -15.23231 -14.69138 -14.50643 -14.10774 -13.74469 -13.46927 -13.19952 -12.84956 -12.62553 -12.62134 -12.43498 -12.17742 -12.03324 -11.44985 -11.36196 -11.22056 -10.71136 -10.52233 -10.50650 -9.25368 -8.18139 -6.28576 -0.01420 0.16467 1.40941 1.43213 1.51246 2.05300 2.42207 2.58369 3.04940 3.14944 3.38481 3.78403 3.99844 4.09487 4.27233 4.42424 4.45926 4.55005 4.59537 4.70231 4.77191 4.92097 4.96082 5.25652 5.27065 5.34269 5.39956 5.56363 5.81246 5.90165 6.10935 6.28947 6.65741 6.81135 6.88614 7.40393 8.93026 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.042748 B = 0.004163 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.840278 B = 6723.804845 C = 6801.011527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.315 6.315 3 C 0.271 3.729 4 N -0.532 5.532 5 C 0.125 3.875 6 C -0.140 4.140 7 C -0.064 4.064 8 C -0.092 4.092 9 C 0.023 3.977 10 C -0.546 4.546 11 H 0.055 0.945 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.960 3.040 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.069 4.069 19 C 0.037 3.963 20 O -0.489 6.489 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.123 0.877 24 H 0.179 0.821 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.049 0.951 29 H -0.002 1.002 30 H -0.004 1.004 31 H 0.264 0.736 32 H 0.160 0.840 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -16.971 7.356 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.222 6.222 3 C 0.091 3.909 4 N -0.257 5.257 5 C -0.030 4.030 6 C -0.142 4.142 7 C -0.102 4.102 8 C -0.130 4.130 9 C -0.014 4.014 10 C -0.584 4.584 11 H 0.074 0.926 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.785 3.215 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.095 4.095 19 C -0.011 4.011 20 O -0.300 6.300 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.142 0.858 24 H 0.196 0.804 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.016 0.984 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.178 0.822 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -8.572 -17.145 6.802 20.340 hybrid contribution 0.949 0.737 -0.332 1.247 sum -7.623 -16.408 6.470 19.214 Atomic orbital electron populations 1.23071 0.76007 1.04634 1.02213 1.86273 1.24187 1.23798 1.87937 1.20573 0.89389 0.85645 0.95319 1.67373 1.40400 0.98782 1.19138 1.22662 0.92787 0.93809 0.93735 1.20835 0.94475 0.96409 1.02508 1.20483 1.01152 0.91197 0.97338 1.21437 0.99693 0.96657 0.95182 1.19035 0.94666 0.92501 0.95215 1.21709 1.40498 1.02136 0.94056 0.92642 1.25921 0.95241 0.96916 1.01530 1.70074 1.43239 1.10780 1.33095 0.85577 0.78753 0.77413 0.79781 1.19318 1.20718 1.19381 1.21888 1.02119 0.89853 0.95600 1.18391 0.86708 0.87654 1.08326 1.84857 1.71120 1.38808 1.35221 0.92216 0.92939 0.85842 0.80377 0.89966 0.90478 0.93650 0.93253 0.98388 0.98603 0.92769 0.82220 0.73460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.82 16 2 O -0.31 -7.95 10.27 -77.12 -0.79 -8.74 16 3 C 0.27 7.50 7.50 84.91 0.64 8.13 16 4 N -0.53 -14.83 9.22 -308.57 -2.84 -17.68 16 5 C 0.12 3.32 10.84 84.62 0.92 4.24 16 6 C -0.14 -3.83 5.15 -19.78 -0.10 -3.93 16 7 C -0.06 -1.94 5.36 29.85 0.16 -1.78 16 8 C -0.09 -3.64 5.14 30.60 0.16 -3.48 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 11 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 14 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 C -0.07 -1.78 9.80 22.53 0.22 -1.56 16 19 C 0.04 0.97 6.75 22.67 0.15 1.12 16 20 O -0.49 -11.12 13.32 -79.85 -1.06 -12.18 16 21 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 22 H 0.05 1.01 8.11 -2.39 -0.02 0.99 16 23 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 25 H 0.08 2.35 8.09 -2.39 -0.02 2.34 16 26 H 0.08 2.26 8.09 -2.38 -0.02 2.24 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 33 H 0.41 5.02 9.06 -74.06 -0.67 4.35 16 Total: -1.00 -68.84 291.76 2.21 -66.62 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.43 Total: 6.05 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 4.17 Total: -24.40 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -2.56 Total: -73.71 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.86 Total: -20.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.84 2.21 -66.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds