Wall clock time and date at job start Mon Mar 30 2020 17:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99792 * 2 1 4 4 C 1.38752 * 120.05389 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94624 * 179.97438 * 4 3 2 6 6 C 1.38297 * 120.05154 * 359.74808 * 5 4 3 7 7 C 1.38246 * 120.11062 * 0.50831 * 6 5 4 8 8 C 1.50701 * 119.97017 * 179.76669 * 7 6 5 9 9 H 1.09007 * 109.46856 * 159.72527 * 8 7 6 10 10 O 1.42894 * 109.47017 * 39.72300 * 8 7 6 11 11 C 1.53003 * 109.46858 * 279.71937 * 8 7 6 12 12 N 1.46499 * 109.46708 * 184.99904 * 11 8 7 13 13 C 1.36935 * 119.99926 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00369 * 179.73019 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00451 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99247 * 17 15 13 19 19 H 1.48496 * 109.47375 * 209.99772 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99467 * 17 15 13 21 21 C 1.38174 * 120.05562 * 359.48757 * 7 6 5 22 22 H 1.09003 * 109.46271 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47227 * 299.99589 * 1 2 3 24 24 H 1.08996 * 109.46966 * 60.00354 * 1 2 3 25 25 H 1.08000 * 120.02990 * 359.97438 * 4 3 2 26 26 H 1.07992 * 119.97648 * 180.02562 * 5 4 3 27 27 H 1.07997 * 119.94524 * 180.27191 * 6 5 4 28 28 H 0.96698 * 113.99844 * 299.99466 * 10 8 7 29 29 H 1.08998 * 109.46692 * 65.00406 * 11 8 7 30 30 H 1.08994 * 109.47584 * 305.00270 * 11 8 7 31 31 H 0.97005 * 120.00261 * 0.02562 * 12 11 8 32 32 H 0.97004 * 120.00382 * 180.02562 * 16 15 13 33 33 H 1.07998 * 120.02168 * 180.27577 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6049 0.0011 6 6 3.3018 3.6759 0.0063 7 6 4.0559 2.5173 0.0005 8 6 5.5607 2.5985 0.0009 9 1 5.9754 1.6536 0.3523 10 8 5.9805 3.6544 0.8673 11 6 6.0568 2.8763 -1.4195 12 7 7.5211 2.8369 -1.4417 13 6 8.1943 3.0587 -2.6133 14 1 7.6457 3.2623 -3.5211 15 6 9.5819 3.0270 -2.6333 16 7 10.2506 2.7841 -1.5260 17 14 10.5003 3.3302 -4.2314 18 1 10.7790 4.7818 -4.3744 19 1 11.7814 2.5794 -4.2164 20 1 9.6706 2.8706 -5.3740 21 6 3.4311 1.2849 0.0000 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2127 2.3203 0.0005 26 1 1.3338 4.5114 0.0019 27 1 3.7921 4.6382 0.0112 28 1 5.6478 4.5264 0.6143 29 1 5.7150 3.8613 -1.7375 30 1 5.6626 2.1188 -2.0968 31 1 8.0138 2.6537 -0.6264 32 1 11.2203 2.7622 -1.5397 33 1 4.0207 0.3801 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250727277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:16 Heat of formation + Delta-G solvation = -51.183470 kcal Electronic energy + Delta-G solvation = -16211.473663 eV Core-core repulsion = 13430.937218 eV Total energy + Delta-G solvation = -2780.536445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24928 -38.32688 -36.29626 -34.04220 -31.79785 -30.81795 -30.13817 -27.62400 -26.90717 -23.86652 -22.61891 -21.90770 -20.70030 -18.17257 -17.11685 -16.39758 -16.16241 -15.89878 -15.83051 -14.79681 -14.47836 -14.13752 -13.58552 -13.43457 -13.20078 -12.70069 -12.62893 -12.23509 -11.97802 -11.64922 -11.38128 -11.08809 -10.91591 -10.78753 -10.57646 -10.14684 -9.77775 -9.54874 -8.87231 -8.76582 -8.22219 -6.89388 -5.71954 -3.01525 1.29630 1.44423 3.14980 3.46302 3.50936 3.53121 3.73568 4.57764 4.69909 4.76392 4.87675 4.93241 4.93960 5.04704 5.23702 5.29405 5.35295 5.51257 5.59339 5.75600 5.86888 5.99436 6.22770 6.26959 6.39947 6.52626 6.60903 6.68571 6.85349 7.32740 7.72105 8.01697 8.46128 9.57591 10.14732 10.50998 11.50482 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.004701 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.925490 B = 5955.326563 C = 6178.091471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.061 4.061 8 C 0.137 3.863 9 H 0.110 0.890 10 O -0.546 6.546 11 C 0.131 3.869 12 N -0.727 5.727 13 C -0.243 4.243 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.140 4.140 22 H 0.098 0.902 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.370 0.630 29 H 0.022 0.978 30 H 0.028 0.972 31 H 0.389 0.611 32 H 0.255 0.745 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.555 -1.287 4.237 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.166 4.166 7 C -0.062 4.062 8 C 0.077 3.923 9 H 0.127 0.873 10 O -0.351 6.351 11 C 0.003 3.997 12 N -0.372 5.372 13 C -0.374 4.374 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.159 4.159 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.217 0.783 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.223 0.777 32 H 0.065 0.935 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.125 -1.951 4.368 20.686 hybrid contribution 0.048 0.686 -0.984 1.200 sum -20.077 -1.265 3.384 20.399 Atomic orbital electron populations 1.23022 0.78676 1.03750 1.01212 1.86081 1.21150 1.27078 1.88866 1.18975 0.92229 0.84056 0.96726 1.21168 0.99721 0.92488 1.09971 1.20860 0.94433 0.96879 0.97586 1.20838 0.93724 0.98147 1.03841 1.20507 0.97169 0.92575 0.95995 1.21140 0.86990 0.92204 0.91933 0.87270 1.86640 1.76327 1.18296 1.53824 1.21265 0.87369 0.98428 0.92621 1.42280 0.98923 1.85957 1.10007 1.19222 0.89226 1.40783 0.88160 0.91260 1.24752 0.96328 1.02660 0.97103 1.69680 1.06541 1.55898 1.25712 0.86184 0.79401 0.77662 0.82907 1.21712 1.21726 1.20770 1.20288 0.91272 0.98379 1.05967 0.88386 0.92793 0.92745 0.85768 0.85838 0.85839 0.78304 0.96014 0.95419 0.77697 0.93484 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.93 10.50 -19.45 -0.20 -4.14 16 3 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 4 C -0.21 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.31 16 6 C -0.15 -1.92 9.32 -39.56 -0.37 -2.29 16 7 C -0.06 -0.92 4.97 -104.64 -0.52 -1.44 16 8 C 0.14 2.39 3.24 -27.88 -0.09 2.30 16 9 H 0.11 1.97 8.00 -51.92 -0.42 1.56 16 10 O -0.55 -9.72 13.13 -35.23 -0.46 -10.18 16 11 C 0.13 2.73 5.88 -4.04 -0.02 2.70 16 12 N -0.73 -19.11 5.55 -59.91 -0.33 -19.44 16 13 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 14 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 17 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.14 -2.06 9.61 -39.43 -0.38 -2.44 16 22 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 25 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 26 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.12 1.41 6.77 -52.49 -0.36 1.05 16 28 H 0.37 5.32 7.49 45.56 0.34 5.66 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.39 10.90 7.67 -40.82 -0.31 10.58 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.13 1.88 8.04 -52.49 -0.42 1.46 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -33.37 285.41 -6.18 -39.55 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -3.53 Total: 10.58 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.65 Total: -10.28 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.39 Total: -47.57 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.67 Total: -14.32 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.37 -6.18 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250727277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.636 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds