Wall clock time and date at job start Mon Mar 30 2020 17:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47183 * 85.00248 * 4 3 2 6 6 C 1.50697 * 109.47183 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00304 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99565 * 180.02562 * 6 5 4 9 9 C 1.37104 * 119.99477 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99885 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99778 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99953 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00231 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46673 * 89.99946 * 13 11 9 15 15 H 1.48499 * 109.47560 * 210.00055 * 13 11 9 16 16 H 1.48505 * 109.46925 * 330.00458 * 13 11 9 17 17 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 18 18 N 1.30833 * 108.20100 * 359.97438 * 17 3 2 19 19 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 20 20 C 1.46500 * 126.03821 * 0.02628 * 19 2 1 21 21 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 22 22 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 23 23 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 24 24 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 25 25 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 26 26 H 1.09001 * 109.47473 * 300.00438 * 5 4 3 27 27 H 1.09007 * 109.46749 * 60.00284 * 5 4 3 28 28 H 0.96997 * 120.00300 * 359.97438 * 8 6 5 29 29 H 0.96999 * 119.99664 * 179.97438 * 12 11 9 30 30 H 1.07995 * 125.89269 * 180.02562 * 17 3 2 31 31 H 1.09000 * 109.47005 * 269.99454 * 20 19 2 32 32 H 1.09003 * 109.46946 * 29.99763 * 20 19 2 33 33 H 1.09006 * 109.46968 * 149.99628 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5669 2.9750 1.4362 6 6 1.1047 4.4093 1.4356 7 8 1.0065 5.0145 0.3891 8 7 0.8015 5.0201 2.5982 9 6 0.3816 6.3252 2.5977 10 1 0.2941 6.8639 1.6658 11 6 0.0685 6.9547 3.7962 12 7 -0.3345 8.2055 3.7957 13 14 0.2190 6.0226 5.4080 14 1 1.5867 6.2024 5.9578 15 1 -0.7769 6.5458 6.3774 16 1 -0.0330 4.5785 5.1702 17 6 3.6335 0.6560 0.0006 18 7 3.6333 -0.6524 0.0015 19 7 2.3026 -1.0900 0.0005 20 6 1.8539 -2.4846 0.0006 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 2.6186 3.1586 -0.4348 25 1 0.9307 2.6155 -0.5903 26 1 0.7914 2.3439 1.8706 27 1 2.4794 2.8871 2.0260 28 1 0.8804 4.5363 3.4352 29 1 -0.5534 8.6448 4.6323 30 1 4.5083 1.2892 0.0011 31 1 1.7424 -2.8303 1.0283 32 1 0.8956 -2.5579 -0.5136 33 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253852956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:20 Heat of formation + Delta-G solvation = 29.696209 kcal Electronic energy + Delta-G solvation = -16218.817429 eV Core-core repulsion = 13474.080941 eV Total energy + Delta-G solvation = -2744.736488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.28497 -38.34061 -34.39655 -33.76106 -33.16584 -31.62664 -30.67181 -27.26586 -26.74357 -24.95153 -22.80838 -20.76823 -19.33040 -19.10348 -18.13485 -16.55099 -15.76432 -15.62105 -14.86064 -14.74548 -14.28831 -13.71165 -13.51145 -13.28837 -12.98083 -12.72298 -12.61744 -12.41110 -12.29517 -12.04979 -11.64479 -11.41076 -11.17562 -10.72721 -10.55518 -10.28832 -9.93864 -9.53327 -9.24628 -8.54887 -8.13815 -8.12089 -6.27724 -3.78638 1.85754 2.48571 2.84755 3.05869 3.10218 3.17751 3.82359 4.13623 4.42808 4.64248 4.76273 4.90291 4.99453 5.11212 5.20305 5.25688 5.40827 5.47665 5.59917 5.72435 5.76353 5.88943 5.99954 6.13099 6.28090 6.56581 6.62702 6.76531 7.04366 7.61567 7.73176 8.19826 8.63860 8.99141 9.47846 9.88901 10.85630 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.004928 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.256934 B = 5680.597923 C = 5874.435075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.081 3.919 3 C -0.227 4.227 4 C -0.020 4.020 5 C -0.126 4.126 6 C 0.450 3.550 7 O -0.579 6.579 8 N -0.592 5.592 9 C -0.305 4.305 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.883 5.883 13 Si 0.879 3.121 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 C 0.055 3.945 18 N -0.305 5.305 19 N -0.380 5.380 20 C 0.103 3.897 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.371 0.629 29 H 0.273 0.727 30 H 0.183 0.817 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -20.213 -3.513 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.046 4.046 3 C -0.238 4.238 4 C -0.058 4.058 5 C -0.167 4.167 6 C 0.237 3.763 7 O -0.463 6.463 8 N -0.231 5.231 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.523 5.523 13 Si 0.705 3.295 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.131 4.131 18 N -0.126 5.126 19 N -0.164 5.164 20 C -0.039 4.039 21 H 0.099 0.901 22 H 0.109 0.891 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.200 0.800 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.063 -20.828 -4.094 21.446 hybrid contribution -0.380 0.059 1.527 1.575 sum 2.683 -20.770 -2.566 21.099 Atomic orbital electron populations 1.20480 0.87391 1.03807 1.03443 1.20875 0.94500 0.87040 1.02182 1.20046 0.92242 0.95979 1.15571 1.19552 1.01971 0.88694 0.95629 1.21521 1.01774 0.94872 0.98518 1.19973 0.83643 0.88427 0.84274 1.90548 1.57451 1.67065 1.31225 1.42285 1.60902 1.13058 1.06848 1.19467 1.41034 0.85936 0.96981 0.86311 1.25037 0.97437 0.95757 0.97947 1.69626 1.44541 1.10582 1.27593 0.86683 0.78947 0.79772 0.84077 1.19624 1.20235 1.19479 1.23809 0.97942 0.91852 0.99467 1.77307 0.96562 1.13146 1.25616 1.48341 1.04010 1.05739 1.58266 1.21766 1.00805 0.78203 1.03083 0.90135 0.89133 0.91530 0.90529 0.90891 0.90802 0.90493 0.79651 0.91682 0.80047 0.91025 0.89746 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.90 36.00 0.36 -0.51 16 2 C 0.08 1.00 6.93 -82.27 -0.57 0.43 16 3 C -0.23 -3.18 5.35 -105.05 -0.56 -3.74 16 4 C -0.02 -0.30 4.72 -27.89 -0.13 -0.43 16 5 C -0.13 -2.11 5.68 -27.89 -0.16 -2.26 16 6 C 0.45 10.26 7.78 -10.98 -0.09 10.17 16 7 O -0.58 -15.49 15.56 5.55 0.09 -15.40 16 8 N -0.59 -14.32 5.09 -10.96 -0.06 -14.38 16 9 C -0.31 -8.73 10.16 -14.93 -0.15 -8.88 16 10 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 12 N -0.88 -26.00 13.96 55.50 0.77 -25.23 16 13 Si 0.88 19.61 27.74 -169.99 -4.71 14.89 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 17 C 0.05 0.75 11.96 -17.36 -0.21 0.54 16 18 N -0.31 -4.36 12.57 30.62 0.39 -3.98 16 19 N -0.38 -4.63 4.01 -63.88 -0.26 -4.89 16 20 C 0.10 0.77 11.27 59.85 0.67 1.44 16 21 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 0.89 7.25 -51.93 -0.38 0.51 16 23 H 0.07 0.47 7.08 -51.93 -0.37 0.10 16 24 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 25 H 0.07 1.17 7.26 -51.93 -0.38 0.79 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.44 7.05 -51.93 -0.37 0.07 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -34.63 285.91 -4.64 -39.27 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.24 Total: 7.62 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.93 Total: -2.21 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.85 Total: -48.48 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.63 -4.64 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253852956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.968 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds