Wall clock time and date at job start Mon Mar 30 2020 17:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12443 * 2 1 4 4 C 1.50697 * 126.04107 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47183 * 85.00248 * 4 3 2 6 6 C 1.50697 * 109.47183 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00304 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99565 * 180.02562 * 6 5 4 9 9 C 1.37104 * 119.99477 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99885 * 359.97438 * 9 8 6 11 11 C 1.38946 * 119.99778 * 179.97438 * 9 8 6 12 12 N 1.31412 * 119.99953 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00231 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46673 * 89.99946 * 13 11 9 15 15 H 1.48499 * 109.47560 * 210.00055 * 13 11 9 16 16 H 1.48505 * 109.46925 * 330.00458 * 13 11 9 17 17 C 1.39877 * 107.91756 * 179.97438 * 3 2 1 18 18 N 1.30833 * 108.20100 * 359.97438 * 17 3 2 19 19 N 1.34945 * 126.12786 * 179.97438 * 2 1 3 20 20 C 1.46500 * 126.03821 * 0.02628 * 19 2 1 21 21 H 1.08993 * 109.47472 * 269.97893 * 1 2 3 22 22 H 1.08999 * 109.47154 * 29.98470 * 1 2 3 23 23 H 1.09005 * 109.47110 * 149.98063 * 1 2 3 24 24 H 1.08997 * 109.47353 * 205.00304 * 4 3 2 25 25 H 1.08999 * 109.47199 * 325.00396 * 4 3 2 26 26 H 1.09001 * 109.47473 * 300.00438 * 5 4 3 27 27 H 1.09007 * 109.46749 * 60.00284 * 5 4 3 28 28 H 0.96997 * 120.00300 * 359.97438 * 8 6 5 29 29 H 0.96999 * 119.99664 * 179.97438 * 12 11 9 30 30 H 1.07995 * 125.89269 * 180.02562 * 17 3 2 31 31 H 1.09000 * 109.47005 * 269.99454 * 20 19 2 32 32 H 1.09003 * 109.46946 * 29.99763 * 20 19 2 33 33 H 1.09006 * 109.46968 * 149.99628 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0005 5 6 1.5669 2.9750 1.4362 6 6 1.1047 4.4093 1.4356 7 8 1.0065 5.0145 0.3891 8 7 0.8015 5.0201 2.5982 9 6 0.3816 6.3252 2.5977 10 1 0.2941 6.8639 1.6658 11 6 0.0685 6.9547 3.7962 12 7 -0.3345 8.2055 3.7957 13 14 0.2190 6.0226 5.4080 14 1 1.5867 6.2024 5.9578 15 1 -0.7769 6.5458 6.3774 16 1 -0.0330 4.5785 5.1702 17 6 3.6335 0.6560 0.0006 18 7 3.6333 -0.6524 0.0015 19 7 2.3026 -1.0900 0.0005 20 6 1.8539 -2.4846 0.0006 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 2.6186 3.1586 -0.4348 25 1 0.9307 2.6155 -0.5903 26 1 0.7914 2.3439 1.8706 27 1 2.4794 2.8871 2.0260 28 1 0.8804 4.5363 3.4352 29 1 -0.5534 8.6448 4.6323 30 1 4.5083 1.2892 0.0011 31 1 1.7424 -2.8303 1.0283 32 1 0.8956 -2.5579 -0.5136 33 1 2.5901 -3.1031 -0.5130 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253852956.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:20 Heat of formation + Delta-G solvation = 4.463733 kcal Electronic energy + Delta-G solvation = -16219.911591 eV Core-core repulsion = 13474.080941 eV Total energy + Delta-G solvation = -2745.830650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.23269 -40.22334 -36.13655 -35.14571 -34.12036 -33.70928 -31.72617 -28.48637 -27.51235 -26.63705 -24.23069 -21.71209 -21.18877 -20.25236 -19.98057 -17.79558 -17.16349 -16.79672 -16.46590 -16.23676 -15.38369 -15.14337 -14.83977 -14.57184 -14.28420 -13.99062 -13.79804 -13.46036 -13.40952 -13.00776 -12.94626 -12.83321 -12.58795 -12.38299 -11.96922 -11.91379 -11.50069 -11.39476 -10.42524 -10.22465 -10.14319 -9.17435 -8.39734 -6.00190 0.93151 1.31520 1.36735 1.45391 1.70474 1.82147 1.99765 2.24367 3.03510 3.17610 3.68631 3.84173 4.13454 4.21665 4.30574 4.39431 4.42653 4.47578 4.67862 4.73051 4.79103 4.81131 4.87749 5.09371 5.14225 5.37335 5.45312 5.57737 5.74983 5.98112 6.20022 6.60598 6.77547 6.90164 7.42741 7.99423 8.78052 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.004928 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.256934 B = 5680.597923 C = 5874.435075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.088 3.912 3 C -0.251 4.251 4 C -0.009 4.009 5 C -0.110 4.110 6 C 0.450 3.550 7 O -0.626 6.626 8 N -0.593 5.593 9 C -0.330 4.330 10 H 0.056 0.944 11 C -0.014 4.014 12 N -0.935 5.935 13 Si 0.963 3.037 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.232 1.232 17 C 0.047 3.953 18 N -0.333 5.333 19 N -0.379 5.379 20 C 0.091 3.909 21 H 0.093 0.907 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.389 0.611 29 H 0.279 0.721 30 H 0.195 0.805 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -23.655 -1.686 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.263 4.263 4 C -0.048 4.048 5 C -0.151 4.151 6 C 0.239 3.761 7 O -0.512 6.512 8 N -0.234 5.234 9 C -0.459 4.459 10 H 0.074 0.926 11 C -0.213 4.213 12 N -0.576 5.576 13 Si 0.783 3.217 14 H -0.183 1.183 15 H -0.199 1.199 16 H -0.155 1.155 17 C -0.138 4.138 18 N -0.155 5.155 19 N -0.163 5.163 20 C -0.048 4.048 21 H 0.112 0.888 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.225 0.775 29 H 0.088 0.912 30 H 0.211 0.789 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.919 -24.316 -2.278 24.597 hybrid contribution -0.356 1.126 0.812 1.433 sum 2.563 -23.191 -1.465 23.378 Atomic orbital electron populations 1.20608 0.85188 1.04852 1.04558 1.21291 0.95810 0.86714 1.00200 1.19884 0.92822 0.95290 1.18276 1.19341 1.01008 0.89832 0.94603 1.21507 1.03381 0.90183 0.99995 1.21190 0.81369 0.90514 0.83032 1.90530 1.58749 1.68885 1.32999 1.42135 1.61393 1.11610 1.08249 1.19063 1.43412 0.88078 0.95384 0.92554 1.26094 0.95918 0.96678 1.02576 1.69805 1.45439 1.12950 1.29366 0.85394 0.79423 0.79924 0.76987 1.18292 1.19907 1.15505 1.24072 0.98476 0.92032 0.99241 1.77259 0.98175 1.13343 1.26714 1.48715 1.03288 1.07257 1.56994 1.22167 1.02184 0.75917 1.04577 0.88819 0.89906 0.88764 0.92189 0.91921 0.87870 0.88168 0.77516 0.91168 0.78861 0.89562 0.87057 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.90 71.24 0.71 -0.73 16 2 C 0.09 1.95 6.93 41.41 0.29 2.24 16 3 C -0.25 -6.60 5.35 -20.14 -0.11 -6.71 16 4 C -0.01 -0.26 4.72 29.85 0.14 -0.12 16 5 C -0.11 -3.45 5.68 29.85 0.17 -3.28 16 6 C 0.45 20.47 7.78 87.66 0.68 21.15 16 7 O -0.63 -34.72 15.56 -3.06 -0.05 -34.76 16 8 N -0.59 -28.38 5.09 -306.98 -1.56 -29.95 16 9 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 10 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 11 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 12 N -0.93 -56.67 13.96 21.66 0.30 -56.37 16 13 Si 0.96 39.14 27.74 68.60 1.90 41.04 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 17 C 0.05 1.21 11.96 85.24 1.02 2.23 16 18 N -0.33 -8.95 12.57 -57.02 -0.72 -9.67 16 19 N -0.38 -8.20 4.01 -356.02 -1.43 -9.63 16 20 C 0.09 1.05 11.27 127.77 1.44 2.49 16 21 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.08 1.43 7.25 -2.39 -0.02 1.42 16 23 H 0.09 0.91 7.08 -2.38 -0.02 0.89 16 24 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 25 H 0.06 1.99 7.26 -2.39 -0.02 1.98 16 26 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 28 H 0.39 15.53 5.76 -92.71 -0.53 15.00 16 29 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.19 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.67 7.05 -2.39 -0.02 0.65 16 33 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -79.66 285.91 4.64 -75.02 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.53 Total: 26.04 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.66 Total: -1.73 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.41 Total: -105.62 kcal Atomic # 8 Polarization: -34.72 SS G_CDS: -0.05 Total: -34.76 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.90 Total: 41.04 kcal Total: -79.66 4.64 -75.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253852956.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.485 kcal (2) G-P(sol) polarization free energy of solvation -79.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds