Wall clock time and date at job start Mon Mar 30 2020 17:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46570 * 2 1 4 4 C 1.35356 * 126.38572 * 84.94929 * 3 2 1 5 5 C 1.41504 * 105.50739 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.52256 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00191 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47219 * 180.02562 * 9 8 6 11 11 H 1.08009 * 119.99950 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00281 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47359 * 89.99145 * 14 12 10 16 16 H 1.48496 * 109.47180 * 209.99780 * 14 12 10 17 17 H 1.48500 * 109.47044 * 329.99454 * 14 12 10 18 18 N 1.31810 * 106.95931 * 0.02562 * 5 4 3 19 19 N 1.28474 * 110.07227 * 359.97438 * 18 5 4 20 20 C 1.46498 * 124.88160 * 179.73361 * 19 18 5 21 21 H 1.08997 * 109.47492 * 60.00028 * 1 2 3 22 22 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47447 * 299.99874 * 1 2 3 24 24 H 1.08999 * 109.46952 * 240.00685 * 2 1 3 25 25 H 1.08997 * 109.47492 * 119.99972 * 2 1 3 26 26 H 1.08001 * 127.25312 * 0.06213 * 4 3 2 27 27 H 0.97007 * 119.99956 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47175 * 300.00670 * 9 8 6 29 29 H 1.09004 * 109.46606 * 60.00536 * 9 8 6 30 30 H 0.97004 * 120.00497 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47309 * 90.02535 * 20 19 18 32 32 H 1.08998 * 109.47245 * 210.03013 * 20 19 18 33 33 H 1.09007 * 109.47418 * 330.02919 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2093 2.2099 1.0854 5 6 2.6912 3.4419 0.5830 6 6 3.0391 4.6387 1.3757 7 8 2.9193 4.6226 2.5853 8 7 3.4893 5.7487 0.7578 9 6 3.8349 6.9356 1.5440 10 6 4.3074 8.0294 0.6212 11 1 4.3467 7.8574 -0.4444 12 6 4.6904 9.2491 1.1373 13 7 4.6430 9.4584 2.4348 14 14 5.2754 10.6052 -0.0066 15 1 4.1152 11.4289 -0.4318 16 1 6.2576 11.4627 0.7039 17 1 5.9183 10.0017 -1.2015 18 7 2.7695 3.3187 -0.7270 19 7 2.3885 2.1445 -1.0829 20 6 2.3410 1.6624 -2.4655 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0228 1.9532 2.1178 27 1 3.5846 5.7617 -0.2075 28 1 2.9566 7.2770 2.0918 29 1 4.6284 6.6863 2.2486 30 1 4.9121 10.3167 2.7979 31 1 3.2953 1.2030 -2.7231 32 1 1.5441 0.9256 -2.5662 33 1 2.1483 2.5000 -3.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256139509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:28 Heat of formation + Delta-G solvation = 27.095894 kcal Electronic energy + Delta-G solvation = -16149.349640 eV Core-core repulsion = 13404.500394 eV Total energy + Delta-G solvation = -2744.849246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.52277 -38.36669 -34.51052 -34.08850 -33.28340 -32.20256 -29.34654 -28.00168 -26.62995 -23.87205 -23.33953 -21.64444 -20.58230 -19.04179 -17.26549 -16.53302 -16.23493 -15.52134 -15.02057 -14.72018 -14.15800 -14.12019 -14.02496 -13.47596 -13.05764 -12.83809 -12.61559 -12.47614 -11.89226 -11.78906 -11.68126 -11.37543 -10.93446 -10.83669 -10.57428 -10.26644 -9.33161 -9.22083 -8.91831 -8.80404 -8.66391 -7.77556 -6.10031 -4.16169 1.89603 2.34189 2.54350 3.29416 3.35014 3.38251 4.10930 4.12146 4.36961 4.44158 4.51075 4.72592 4.88095 5.02299 5.13083 5.19341 5.26060 5.28384 5.43226 5.57335 5.79395 5.88309 5.91922 6.08644 6.61805 6.87253 7.38326 7.51136 7.59173 7.74374 8.02842 8.10997 8.73981 8.85922 9.17386 9.49933 11.00365 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045493 B = 0.004717 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.329048 B = 5935.119581 C = 6435.880612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.004 3.996 4 C -0.179 4.179 5 C 0.000 4.000 6 C 0.583 3.417 7 O -0.549 6.549 8 N -0.696 5.696 9 C 0.248 3.752 10 C -0.541 4.541 11 H 0.064 0.936 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.265 5.265 19 N -0.288 5.288 20 C 0.087 3.913 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.159 0.841 27 H 0.397 0.603 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 -19.181 -9.765 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.120 4.120 4 C -0.207 4.207 5 C -0.161 4.161 6 C 0.366 3.634 7 O -0.427 6.427 8 N -0.344 5.344 9 C 0.128 3.872 10 C -0.579 4.579 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.099 5.099 19 N -0.076 5.076 20 C -0.053 4.053 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.177 0.823 27 H 0.230 0.770 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.206 -18.447 -9.847 21.812 hybrid contribution 0.188 0.390 -0.408 0.595 sum -6.018 -18.057 -10.255 21.621 Atomic orbital electron populations 1.21774 0.94216 1.01927 1.02714 1.20061 0.96276 0.89000 1.03602 1.21311 1.06799 0.96828 0.87107 1.21505 1.07119 0.92613 0.99477 1.22329 1.06855 0.97276 0.89629 1.16976 0.78503 0.81516 0.86404 1.90741 1.55512 1.83147 1.13268 1.46368 1.63066 1.13524 1.11414 1.19176 0.96353 0.80169 0.91547 1.21241 1.45565 0.97523 0.93611 0.91830 1.24940 0.95320 0.98481 0.95253 1.69977 1.46956 1.24310 1.11164 0.86408 0.78556 0.81421 0.80487 1.20482 1.21029 1.19746 1.73593 1.18682 1.02304 1.15367 1.45281 1.46414 1.08443 1.07498 1.22080 1.03782 1.01436 0.78038 0.92854 0.91930 0.91777 0.90976 0.89247 0.82330 0.76977 0.95256 0.95246 0.92493 0.89986 0.89072 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.05 -0.39 6.00 -27.88 -0.17 -0.56 16 3 C 0.00 0.04 6.17 -82.21 -0.51 -0.46 16 4 C -0.18 -2.86 10.73 -39.37 -0.42 -3.28 16 5 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 6 C 0.58 13.54 7.82 -12.39 -0.10 13.44 16 7 O -0.55 -14.39 16.93 5.31 0.09 -14.30 16 8 N -0.70 -16.60 5.55 -62.47 -0.35 -16.95 16 9 C 0.25 6.95 5.43 -5.19 -0.03 6.92 16 10 C -0.54 -15.36 9.28 -34.44 -0.32 -15.68 16 11 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 12 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.26 -4.51 11.67 33.42 0.39 -4.12 16 19 N -0.29 -3.74 3.70 -63.85 -0.24 -3.98 16 20 C 0.09 0.65 10.89 59.85 0.65 1.30 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.42 7.43 -51.93 -0.39 0.03 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 27 H 0.40 8.66 8.05 -40.82 -0.33 8.33 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.43 7.44 -51.93 -0.39 0.04 16 33 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 292.80 15.07 4.41 4.41 Total: -1.00 -34.81 292.80 -5.62 -40.43 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.44 Total: 1.95 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.21 Total: 2.13 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.54 Total: -51.04 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.81 -5.62 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256139509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.529 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds