Wall clock time and date at job start Mon Mar 30 2020 17:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46570 * 2 1 4 4 C 1.35356 * 126.38572 * 84.94929 * 3 2 1 5 5 C 1.41504 * 105.50739 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.52256 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00191 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47219 * 180.02562 * 9 8 6 11 11 H 1.08009 * 119.99950 * 359.97438 * 10 9 8 12 12 C 1.37872 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00281 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47359 * 89.99145 * 14 12 10 16 16 H 1.48496 * 109.47180 * 209.99780 * 14 12 10 17 17 H 1.48500 * 109.47044 * 329.99454 * 14 12 10 18 18 N 1.31810 * 106.95931 * 0.02562 * 5 4 3 19 19 N 1.28474 * 110.07227 * 359.97438 * 18 5 4 20 20 C 1.46498 * 124.88160 * 179.73361 * 19 18 5 21 21 H 1.08997 * 109.47492 * 60.00028 * 1 2 3 22 22 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47447 * 299.99874 * 1 2 3 24 24 H 1.08999 * 109.46952 * 240.00685 * 2 1 3 25 25 H 1.08997 * 109.47492 * 119.99972 * 2 1 3 26 26 H 1.08001 * 127.25312 * 0.06213 * 4 3 2 27 27 H 0.97007 * 119.99956 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47175 * 300.00670 * 9 8 6 29 29 H 1.09004 * 109.46606 * 60.00536 * 9 8 6 30 30 H 0.97004 * 120.00497 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47309 * 90.02535 * 20 19 18 32 32 H 1.08998 * 109.47245 * 210.03013 * 20 19 18 33 33 H 1.09007 * 109.47418 * 330.02919 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2093 2.2099 1.0854 5 6 2.6912 3.4419 0.5830 6 6 3.0391 4.6387 1.3757 7 8 2.9193 4.6226 2.5853 8 7 3.4893 5.7487 0.7578 9 6 3.8349 6.9356 1.5440 10 6 4.3074 8.0294 0.6212 11 1 4.3467 7.8574 -0.4444 12 6 4.6904 9.2491 1.1373 13 7 4.6430 9.4584 2.4348 14 14 5.2754 10.6052 -0.0066 15 1 4.1152 11.4289 -0.4318 16 1 6.2576 11.4627 0.7039 17 1 5.9183 10.0017 -1.2015 18 7 2.7695 3.3187 -0.7270 19 7 2.3885 2.1445 -1.0829 20 6 2.3410 1.6624 -2.4655 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0228 1.9532 2.1178 27 1 3.5846 5.7617 -0.2075 28 1 2.9566 7.2770 2.0918 29 1 4.6284 6.6863 2.2486 30 1 4.9121 10.3167 2.7979 31 1 3.2953 1.2030 -2.7231 32 1 1.5441 0.9256 -2.5662 33 1 2.1483 2.5000 -3.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256139509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:28 Heat of formation + Delta-G solvation = 0.966248 kcal Electronic energy + Delta-G solvation = -16150.482706 eV Core-core repulsion = 13404.500394 eV Total energy + Delta-G solvation = -2745.982312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.69342 -40.27786 -36.21641 -35.32744 -34.43787 -34.18744 -30.39943 -29.71299 -28.05023 -25.28764 -24.45044 -23.38577 -21.87253 -20.69516 -18.80069 -17.98465 -17.33136 -17.24909 -16.96068 -16.07733 -16.01114 -15.39887 -15.07710 -14.60705 -14.20075 -14.07979 -14.02544 -13.63222 -13.39144 -13.18816 -12.96033 -12.72099 -12.47258 -12.25241 -12.03533 -11.69870 -11.51699 -11.15220 -10.82507 -10.19742 -9.93457 -9.80966 -8.30287 -6.47468 0.53532 1.11722 1.41980 1.45428 1.56541 1.60313 2.30690 2.39790 2.53220 3.04099 3.36841 3.63280 3.97841 4.20243 4.37055 4.45136 4.48828 4.56335 4.67078 4.71310 4.82291 5.05149 5.08532 5.19577 5.20518 5.33059 5.41491 5.42173 5.63274 5.80723 5.92073 6.60209 6.69635 6.98535 7.18676 7.34587 8.82234 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045493 B = 0.004717 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.329048 B = 5935.119581 C = 6435.880612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.029 3.971 4 C -0.205 4.205 5 C -0.039 4.039 6 C 0.582 3.418 7 O -0.591 6.591 8 N -0.694 5.694 9 C 0.265 3.735 10 C -0.560 4.560 11 H 0.079 0.921 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.988 3.012 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.258 1.258 18 N -0.277 5.277 19 N -0.274 5.274 20 C 0.071 3.929 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.158 0.842 27 H 0.408 0.592 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.271 0.729 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 -20.999 -12.948 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.096 4.096 4 C -0.233 4.233 5 C -0.197 4.197 6 C 0.368 3.632 7 O -0.471 6.471 8 N -0.342 5.342 9 C 0.143 3.857 10 C -0.598 4.598 11 H 0.098 0.902 12 C -0.194 4.194 13 N -0.567 5.567 14 Si 0.811 3.189 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.181 1.181 18 N -0.114 5.114 19 N -0.063 5.063 20 C -0.067 4.067 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.175 0.825 27 H 0.243 0.757 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.484 -20.296 -13.071 24.996 hybrid contribution 0.216 0.791 0.529 0.975 sum -6.268 -19.505 -12.542 24.022 Atomic orbital electron populations 1.21770 0.93414 1.03360 1.01937 1.20306 0.96720 0.85768 1.05855 1.21923 1.03911 0.98193 0.85574 1.21671 1.08485 0.92259 1.00858 1.21702 1.10626 0.96699 0.90722 1.17546 0.77014 0.82315 0.86332 1.90691 1.57003 1.84100 1.15286 1.46124 1.63676 1.12872 1.11570 1.18676 0.93610 0.81953 0.91476 1.21569 1.46033 0.97889 0.94270 0.90250 1.26072 0.94894 1.01348 0.97052 1.70132 1.47623 1.25369 1.13595 0.85110 0.78205 0.77414 0.78194 1.19415 1.20510 1.18146 1.73491 1.19276 1.04566 1.14106 1.45867 1.43679 1.07078 1.09704 1.22666 1.06569 1.02604 0.74872 0.92681 0.89392 0.93614 0.87562 0.88193 0.82464 0.75702 0.98845 0.98821 0.92059 0.87720 0.85303 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.83 16 2 C -0.05 -0.55 6.00 29.85 0.18 -0.37 16 3 C 0.03 0.66 6.17 41.40 0.26 0.92 16 4 C -0.20 -6.56 10.73 22.41 0.24 -6.32 16 5 C -0.04 -1.56 7.13 42.46 0.30 -1.25 16 6 C 0.58 28.66 7.82 86.75 0.68 29.34 16 7 O -0.59 -33.21 16.93 -3.92 -0.07 -33.27 16 8 N -0.69 -34.88 5.55 -469.84 -2.61 -37.49 16 9 C 0.27 15.79 5.43 85.63 0.46 16.26 16 10 C -0.56 -32.55 9.28 25.60 0.24 -32.31 16 11 H 0.08 4.26 7.60 -2.91 -0.02 4.24 16 12 C 0.01 0.35 5.46 84.65 0.46 0.82 16 13 N -0.93 -57.66 13.29 21.44 0.28 -57.38 16 14 Si 0.99 43.91 29.54 68.60 2.03 45.94 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 N -0.28 -9.28 11.67 -48.18 -0.56 -9.84 16 19 N -0.27 -6.42 3.70 -355.93 -1.32 -7.74 16 20 C 0.07 0.75 10.89 127.77 1.39 2.15 16 21 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.11 0.59 7.43 -2.39 -0.02 0.57 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 27 H 0.41 18.40 8.05 -92.70 -0.75 17.65 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.13 0.46 7.44 -2.39 -0.02 0.44 16 33 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -80.54 292.80 3.05 -77.49 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.37 Total: 13.91 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 4.93 Total: 8.38 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.20 Total: -112.45 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.07 Total: -33.27 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.54 3.05 -77.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256139509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.455 kcal (2) G-P(sol) polarization free energy of solvation -80.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds