Wall clock time and date at job start Mon Mar 30 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48506 * 109.46947 * 239.99612 * 3 2 1 5 5 H 1.48494 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47157 * 119.99636 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50699 * 109.47247 * 290.12346 * 14 13 12 16 16 C 1.34668 * 126.58879 * 264.68667 * 15 14 13 17 17 N 1.34135 * 108.01838 * 179.87305 * 16 15 14 18 18 C 1.30502 * 109.25173 * 0.39639 * 17 16 15 19 19 N 1.35035 * 108.70379 * 359.75606 * 18 17 16 20 20 H 0.97005 * 126.40228 * 179.97438 * 19 18 17 21 21 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 22 22 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 23 23 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 24 24 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 25 25 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 26 26 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 27 27 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 28 28 H 1.08998 * 109.46669 * 50.12444 * 14 13 12 29 29 H 1.08999 * 109.47032 * 170.11876 * 14 13 12 30 30 H 1.07997 * 125.99138 * 0.02562 * 16 15 14 31 31 H 1.08005 * 125.64571 * 179.73150 * 18 17 16 32 32 H 1.08999 * 110.37744 * 142.93014 * 21 13 12 33 33 H 1.09007 * 110.37325 * 265.15824 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 1.3840 -6.8460 -2.0250 16 6 1.4517 -8.0543 -1.4343 17 7 0.5856 -8.8688 -2.0554 18 6 -0.0100 -8.2133 -3.0138 19 7 0.4594 -6.9472 -3.0292 20 1 0.1917 -6.2414 -3.6384 21 6 2.2174 -3.7051 -0.1612 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2256 -1.9561 1.2755 24 1 0.8704 -2.1841 -2.1318 25 1 -0.6057 -2.1841 -1.1147 26 1 -0.6880 -4.5114 -1.0212 27 1 0.2900 -4.4148 -2.5122 28 1 2.4160 -5.0554 -2.5572 29 1 3.1020 -5.9204 -1.1611 30 1 2.0895 -8.3202 -0.6044 31 1 -0.7546 -8.6168 -3.6841 32 1 2.6064 -4.0121 0.8096 33 1 3.0364 -3.4493 -0.8337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261458173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:34 Heat of formation + Delta-G solvation = 14.890833 kcal Electronic energy + Delta-G solvation = -17009.331493 eV Core-core repulsion = 14263.952996 eV Total energy + Delta-G solvation = -2745.378497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.87483 -38.37958 -34.90477 -32.34766 -32.18251 -31.18882 -28.63409 -28.09846 -25.41538 -23.93089 -21.37614 -20.92647 -20.09876 -19.61940 -17.62273 -17.01472 -15.50889 -15.05080 -14.92382 -14.49472 -14.10087 -13.98186 -13.72472 -13.21458 -12.62002 -12.52216 -12.13375 -11.64604 -11.34395 -11.28098 -11.06270 -10.82236 -10.49926 -10.38082 -9.95326 -9.88401 -9.85701 -9.26713 -8.65923 -8.28038 -8.11717 -7.70008 -6.26253 -4.34972 2.17795 3.19635 3.24555 3.25146 3.27816 3.31354 4.24787 4.66779 4.78926 5.00362 5.07646 5.20697 5.47643 5.62258 5.75090 5.79807 5.86908 5.95300 6.05522 6.33194 6.41757 6.58258 6.78140 6.88402 6.97214 7.32650 7.41067 7.46439 7.52620 7.63504 7.76237 8.10430 8.18356 8.67382 9.34013 9.47173 10.80687 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056691 B = 0.005622 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.785429 B = 4979.455917 C = 5041.651135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.254 3.746 10 O -0.578 6.578 11 C -0.145 4.145 12 C 0.049 3.951 13 N -0.521 5.521 14 C 0.121 3.879 15 C 0.001 3.999 16 C -0.018 4.018 17 N -0.498 5.498 18 C 0.173 3.827 19 N -0.566 5.566 20 H 0.416 0.584 21 C 0.057 3.943 22 H 0.267 0.733 23 H 0.377 0.623 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.203 0.797 32 H 0.074 0.926 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -8.258 -6.939 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.213 3.787 10 O -0.386 6.386 11 C -0.185 4.185 12 C -0.079 4.079 13 N -0.246 5.246 14 C -0.008 4.008 15 C -0.115 4.115 16 C -0.166 4.166 17 N -0.217 5.217 18 C -0.110 4.110 19 N -0.170 5.170 20 H 0.254 0.746 21 C -0.069 4.069 22 H 0.077 0.923 23 H 0.226 0.774 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.185 0.815 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.739 -9.844 -6.213 11.664 hybrid contribution 0.234 3.119 -1.419 3.435 sum 0.973 -6.725 -7.631 10.218 Atomic orbital electron populations 1.69726 1.05967 1.27575 1.50159 1.24998 0.94982 0.99441 0.93615 0.86526 0.79585 0.82335 0.78800 1.20204 1.21129 1.19955 1.21493 0.93537 0.90636 1.51940 0.92077 1.19590 0.86767 0.90482 0.81843 1.86152 1.51309 1.56687 1.44422 1.23281 1.02835 0.91565 1.00778 1.22823 0.94611 0.96372 0.94106 1.63662 1.08879 1.21376 1.30648 1.20654 0.94894 0.89863 0.95422 1.21268 0.97757 0.98621 0.93885 1.22025 1.02250 0.89767 1.02551 1.70245 1.10175 1.33246 1.08024 1.24843 1.03057 0.81746 1.01373 1.43351 1.32747 1.12960 1.27947 0.74621 1.23111 0.95077 0.90228 0.98511 0.92278 0.77391 0.92640 0.90364 0.91802 0.95678 0.94409 0.88743 0.81505 0.78005 0.90740 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 10.75 55.43 0.60 -22.88 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.08 8.29 -34.44 -0.29 -14.36 16 8 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 9 C 0.25 6.16 0.88 -89.38 -0.08 6.08 16 10 O -0.58 -15.03 13.16 -35.23 -0.46 -15.49 16 11 C -0.15 -3.24 5.36 -24.91 -0.13 -3.38 16 12 C 0.05 0.92 6.40 -2.84 -0.02 0.90 16 13 N -0.52 -9.81 5.15 -232.38 -1.20 -11.00 16 14 C 0.12 1.83 5.10 -4.98 -0.03 1.81 16 15 C 0.00 0.01 6.20 -81.60 -0.51 -0.49 16 16 C -0.02 -0.27 11.79 -17.81 -0.21 -0.48 16 17 N -0.50 -7.66 11.25 -14.67 -0.17 -7.83 16 18 C 0.17 2.11 13.04 -90.38 -1.18 0.94 16 19 N -0.57 -6.91 5.84 -10.30 -0.06 -6.97 16 20 H 0.42 4.09 8.16 -40.82 -0.33 3.75 16 21 C 0.06 1.21 5.89 -2.04 -0.01 1.20 16 22 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 23 H 0.38 9.85 7.56 45.56 0.34 10.19 16 24 H 0.05 1.25 8.03 -51.93 -0.42 0.84 16 25 H 0.08 1.87 7.53 -51.93 -0.39 1.48 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.02 0.40 6.26 -51.93 -0.33 0.08 16 28 H 0.04 0.55 7.96 -51.93 -0.41 0.14 16 29 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 LS Contribution 275.03 15.07 4.14 4.14 Total: -1.00 -29.51 275.03 -8.30 -37.81 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -3.59 Total: 13.03 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.54 Total: -6.02 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.83 Total: -48.69 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.46 Total: -15.49 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.51 -8.30 -37.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.699 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds