Wall clock time and date at job start Mon Mar 30 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99759 * 2 1 4 4 H 1.48506 * 109.46947 * 239.99612 * 3 2 1 5 5 H 1.48494 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47157 * 119.99636 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00057 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.90351 * 297.58592 * 9 7 2 11 11 C 1.55142 * 110.99048 * 61.45406 * 9 7 2 12 12 C 1.54312 * 103.17714 * 153.83199 * 11 9 7 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50699 * 109.47247 * 290.12346 * 14 13 12 16 16 C 1.34668 * 126.58879 * 264.68667 * 15 14 13 17 17 N 1.34135 * 108.01838 * 179.87305 * 16 15 14 18 18 C 1.30502 * 109.25173 * 0.39639 * 17 16 15 19 19 N 1.35035 * 108.70379 * 359.75606 * 18 17 16 20 20 H 0.97005 * 126.40228 * 179.97438 * 19 18 17 21 21 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 22 22 H 0.96993 * 120.00152 * 0.02562 * 1 2 3 23 23 H 0.96696 * 113.99925 * 62.41098 * 10 9 7 24 24 H 1.09002 * 110.70816 * 35.36047 * 11 9 7 25 25 H 1.09005 * 110.70106 * 272.30188 * 11 9 7 26 26 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 27 27 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 28 28 H 1.08998 * 109.46669 * 50.12444 * 14 13 12 29 29 H 1.08999 * 109.47032 * 170.11876 * 14 13 12 30 30 H 1.07997 * 125.99138 * 0.02562 * 16 15 14 31 31 H 1.08005 * 125.64571 * 179.73150 * 18 17 16 32 32 H 1.08999 * 110.37744 * 142.93014 * 21 13 12 33 33 H 1.09007 * 110.37325 * 265.15824 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4604 -2.6314 1.1834 11 6 0.3743 -2.6346 -1.2722 12 6 0.2500 -4.1621 -1.4527 13 7 1.3874 -4.7795 -0.7464 14 6 2.1783 -5.6197 -1.6555 15 6 1.3840 -6.8460 -2.0250 16 6 1.4517 -8.0543 -1.4343 17 7 0.5856 -8.8688 -2.0554 18 6 -0.0100 -8.2133 -3.0138 19 7 0.4594 -6.9472 -3.0292 20 1 0.1917 -6.2414 -3.6384 21 6 2.2174 -3.7051 -0.1612 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2256 -1.9561 1.2755 24 1 0.8704 -2.1841 -2.1318 25 1 -0.6057 -2.1841 -1.1147 26 1 -0.6880 -4.5114 -1.0212 27 1 0.2900 -4.4148 -2.5122 28 1 2.4160 -5.0554 -2.5572 29 1 3.1020 -5.9204 -1.1611 30 1 2.0895 -8.3202 -0.6044 31 1 -0.7546 -8.6168 -3.6841 32 1 2.6064 -4.0121 0.8096 33 1 3.0364 -3.4493 -0.8337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261458173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:34 Heat of formation + Delta-G solvation = -7.125142 kcal Electronic energy + Delta-G solvation = -17010.286177 eV Core-core repulsion = 14263.952996 eV Total energy + Delta-G solvation = -2746.333181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.90805 -40.02664 -36.65790 -34.19020 -33.45028 -32.57119 -30.08098 -29.81254 -27.00065 -25.49381 -22.40045 -22.25031 -21.47459 -21.35918 -19.09183 -18.53981 -17.07633 -16.89596 -16.44889 -15.96256 -15.46351 -15.24743 -15.12625 -14.28837 -14.28405 -14.01853 -13.78145 -13.30296 -13.14941 -12.89266 -12.76007 -12.53831 -12.28470 -12.19562 -11.71782 -11.12828 -10.95534 -10.90573 -10.61362 -10.10043 -9.38571 -9.12596 -8.22228 -6.38314 1.13201 1.41290 1.43370 1.50313 2.24284 2.31500 2.38034 3.02329 3.25291 3.77046 3.95876 3.98210 4.02403 4.17914 4.33439 4.36437 4.57591 4.66480 4.71726 4.76548 4.87750 5.05023 5.21821 5.32660 5.45409 5.53445 5.78465 5.81311 5.93028 6.18685 6.23127 6.58434 6.67781 7.16649 7.33545 7.44257 8.82819 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.056691 B = 0.005622 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.785429 B = 4979.455917 C = 5041.651135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.057 0.943 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.136 4.136 12 C 0.061 3.939 13 N -0.531 5.531 14 C 0.124 3.876 15 C -0.012 4.012 16 C -0.034 4.034 17 N -0.537 5.537 18 C 0.190 3.810 19 N -0.560 5.560 20 H 0.428 0.572 21 C 0.066 3.934 22 H 0.268 0.732 23 H 0.371 0.629 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.245 0.755 32 H 0.066 0.934 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -8.672 -8.339 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.169 4.169 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.600 4.600 8 H 0.075 0.925 9 C 0.193 3.807 10 O -0.397 6.397 11 C -0.175 4.175 12 C -0.067 4.067 13 N -0.255 5.255 14 C -0.004 4.004 15 C -0.129 4.129 16 C -0.182 4.182 17 N -0.256 5.256 18 C -0.094 4.094 19 N -0.165 5.165 20 H 0.268 0.732 21 C -0.061 4.061 22 H 0.078 0.922 23 H 0.219 0.781 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.188 0.812 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.972 -10.259 -7.628 12.821 hybrid contribution 0.131 3.196 -0.998 3.351 sum 1.103 -7.063 -8.626 11.203 Atomic orbital electron populations 1.69821 1.06894 1.28179 1.50213 1.25681 0.95771 1.02243 0.93241 0.85606 0.78439 0.78775 0.78755 1.19531 1.20773 1.20040 1.21792 0.93622 0.92017 1.52553 0.92473 1.19900 0.87526 0.91395 0.81914 1.86146 1.51355 1.56462 1.45708 1.23068 1.00975 0.93948 0.99527 1.22660 0.94386 0.93691 0.95966 1.63575 1.09075 1.20676 1.32171 1.20672 0.94970 0.89495 0.95282 1.21097 0.98795 0.98032 0.94933 1.22244 1.02631 0.90314 1.02968 1.70249 1.11399 1.34335 1.09659 1.25685 1.02115 0.81257 1.00339 1.43342 1.32064 1.13512 1.27556 0.73158 1.22939 0.94797 0.89619 0.98715 0.92245 0.78077 0.93309 0.92627 0.92846 0.92476 0.93194 0.87539 0.81228 0.73873 0.91590 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.14 10.75 21.45 0.23 -47.91 16 2 C 0.03 1.63 5.29 84.65 0.45 2.08 16 3 Si 0.96 41.23 29.54 68.60 2.03 43.25 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.56 -29.48 8.29 25.60 0.21 -29.27 16 8 H 0.06 2.96 7.79 -2.91 -0.02 2.93 16 9 C 0.23 11.34 0.88 -9.99 -0.01 11.33 16 10 O -0.59 -31.17 13.16 -148.98 -1.96 -33.13 16 11 C -0.14 -6.04 5.36 31.77 0.17 -5.87 16 12 C 0.06 2.21 6.40 86.64 0.55 2.77 16 13 N -0.53 -19.20 5.15 -889.11 -4.58 -23.78 16 14 C 0.12 3.49 5.10 85.56 0.44 3.93 16 15 C -0.01 -0.33 6.20 40.95 0.25 -0.07 16 16 C -0.03 -0.98 11.79 83.52 0.98 0.00 16 17 N -0.54 -15.50 11.25 -200.31 -2.25 -17.76 16 18 C 0.19 4.04 13.04 180.26 2.35 6.39 16 19 N -0.56 -11.99 5.84 -186.49 -1.09 -13.08 16 20 H 0.43 6.91 8.16 -92.70 -0.76 6.16 16 21 C 0.07 2.75 5.89 86.94 0.51 3.26 16 22 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 23 H 0.37 19.94 7.56 -74.06 -0.56 19.38 16 24 H 0.05 2.18 8.03 -2.39 -0.02 2.16 16 25 H 0.05 2.69 7.53 -2.38 -0.02 2.67 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.69 6.26 -2.39 -0.01 1.68 16 28 H 0.05 1.30 7.96 -2.39 -0.02 1.28 16 29 H 0.11 2.72 8.07 -2.39 -0.02 2.70 16 30 H 0.17 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.25 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 2.28 7.71 -2.38 -0.02 2.26 16 Total: -1.00 -62.72 275.03 -1.90 -64.61 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.18 Total: 33.26 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.91 Total: -5.46 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -7.69 Total: -102.53 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.96 Total: -33.13 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -62.72 -1.90 -64.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261458173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.487 kcal (2) G-P(sol) polarization free energy of solvation -62.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds