Wall clock time and date at job start Mon Mar 30 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47444 * 2 1 4 4 C 1.46494 * 120.00501 * 271.24663 * 3 2 1 5 5 C 1.50693 * 109.47557 * 265.36225 * 4 3 2 6 6 H 1.08003 * 119.99922 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00422 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00147 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46897 * 119.99824 * 9 7 5 12 12 H 1.48500 * 109.47012 * 239.99780 * 9 7 5 13 13 C 1.34781 * 119.99864 * 91.25013 * 3 2 1 14 14 O 1.21623 * 119.99925 * 354.65620 * 13 3 2 15 15 C 1.47322 * 120.00232 * 174.93738 * 13 3 2 16 16 C 1.36419 * 126.23761 * 173.94581 * 15 13 3 17 17 N 1.35381 * 106.87219 * 179.97438 * 16 15 13 18 18 C 1.46498 * 126.13651 * 180.02562 * 17 16 15 19 19 C 1.35849 * 107.72897 * 359.97438 * 17 16 15 20 20 N 1.30175 * 109.00031 * 359.75310 * 19 17 16 21 21 H 1.08998 * 109.47254 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47468 * 299.99914 * 1 2 3 23 23 H 1.09003 * 109.46774 * 59.99871 * 1 2 3 24 24 H 1.09008 * 109.47285 * 239.99817 * 2 1 3 25 25 H 1.08997 * 109.47085 * 120.00442 * 2 1 3 26 26 H 1.09002 * 109.47120 * 25.35919 * 4 3 2 27 27 H 1.09001 * 109.47471 * 145.35693 * 4 3 2 28 28 H 0.96996 * 120.00610 * 180.02562 * 8 7 5 29 29 H 1.08003 * 126.56399 * 359.95081 * 16 15 13 30 30 H 1.09003 * 109.47246 * 89.99328 * 18 17 16 31 31 H 1.08993 * 109.47220 * 209.99418 * 18 17 16 32 32 H 1.09004 * 109.47056 * 329.99975 * 18 17 16 33 33 H 1.08000 * 125.49622 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2366 2.0810 -1.2683 5 6 3.6805 1.9424 -1.6767 6 1 4.3671 1.3887 -1.0535 7 6 4.1250 2.5224 -2.8458 8 7 3.2889 3.1963 -3.6050 9 14 5.9151 2.3512 -3.3516 10 1 6.6429 1.5521 -2.3333 11 1 5.9945 1.6674 -4.6674 12 1 6.5311 3.6984 -3.4559 13 6 2.2670 2.0080 1.1670 14 8 1.9947 1.4634 2.2198 15 6 2.8629 3.3553 1.1671 16 6 3.0605 4.1496 2.2585 17 7 3.6301 5.2942 1.8134 18 6 4.0222 6.4409 2.6366 19 6 3.7739 5.1884 0.4667 20 7 3.3216 4.0300 0.0820 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.5982 1.6465 -2.0376 27 1 1.9928 3.1365 -1.1475 28 1 3.6015 3.6040 -4.4277 29 1 2.8102 3.9110 3.2817 30 1 5.0514 6.3125 2.9719 31 1 3.9433 7.3547 2.0478 32 1 3.3637 6.5086 3.5026 33 1 4.1992 5.9418 -0.1797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230161770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:05 Heat of formation + Delta-G solvation = 19.848296 kcal Electronic energy + Delta-G solvation = -17187.480177 eV Core-core repulsion = 14442.316651 eV Total energy + Delta-G solvation = -2745.163525 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.88964 -40.25984 -36.81544 -34.90819 -34.44257 -31.98408 -30.47136 -28.73276 -27.84675 -24.98269 -24.75848 -22.66968 -21.81927 -19.97253 -18.50928 -18.05164 -17.27328 -16.82077 -16.59117 -16.12360 -15.60129 -15.04711 -14.78016 -14.50255 -14.27256 -14.10847 -13.62981 -13.47694 -13.28257 -13.09622 -13.03285 -12.62677 -12.55600 -12.09168 -11.76328 -11.54777 -10.99120 -10.53052 -10.41381 -10.15636 -9.58064 -9.20425 -7.96110 -6.00292 0.76608 1.41896 1.44004 1.54677 1.73410 1.96086 2.45535 2.60091 2.81310 3.36458 3.73708 3.98389 4.11913 4.16308 4.39020 4.43075 4.52583 4.57342 4.65958 4.78207 4.86514 5.02932 5.14034 5.25523 5.29632 5.49868 5.68289 5.92082 6.01824 6.33800 6.38797 6.68485 6.99832 7.20103 7.50801 7.63552 9.12398 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015594 B = 0.012328 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.102773 B = 2270.634232 C = 3669.867600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.261 3.739 5 C -0.486 4.486 6 H 0.029 0.971 7 C 0.029 3.971 8 N -0.922 5.922 9 Si 0.944 3.056 10 H -0.283 1.283 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.589 3.411 14 O -0.601 6.601 15 C -0.102 4.102 16 C 0.034 3.966 17 N -0.454 5.454 18 C 0.065 3.935 19 C 0.159 3.841 20 N -0.441 5.441 21 H 0.091 0.909 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.004 0.996 27 H 0.048 0.952 28 H 0.259 0.741 29 H 0.204 0.796 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 6.557 10.320 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.322 5.322 4 C 0.140 3.860 5 C -0.525 4.525 6 H 0.047 0.953 7 C -0.169 4.169 8 N -0.564 5.564 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.203 1.203 13 C 0.379 3.621 14 O -0.485 6.485 15 C -0.231 4.231 16 C -0.107 4.107 17 N -0.135 5.135 18 C -0.075 4.075 19 C -0.125 4.125 20 N -0.158 5.158 21 H 0.109 0.891 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.022 0.978 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.221 0.779 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.183 6.179 9.898 11.670 hybrid contribution 1.025 0.180 0.079 1.044 sum 1.208 6.359 9.977 11.892 Atomic orbital electron populations 1.21995 0.94617 1.03063 1.01130 1.21455 0.95421 0.82434 1.02193 1.48205 1.62365 1.14156 1.07504 1.19215 0.95317 0.93005 0.78452 1.21181 0.94874 1.31368 1.05116 0.95271 1.25294 1.00104 0.95041 0.96428 1.70029 1.35678 1.36478 1.14192 0.85741 0.81940 0.77666 0.77493 1.20830 1.20801 1.20329 1.17388 0.77118 0.84499 0.83138 1.90611 1.57522 1.68458 1.31945 1.20639 1.13093 0.97802 0.91561 1.22682 1.00863 0.87087 1.00096 1.45701 1.44466 1.14766 1.08604 1.22460 1.02894 0.85978 0.96141 1.25939 1.05654 0.98229 0.82676 1.71370 1.11852 1.04095 1.28452 0.89073 0.93694 0.93268 0.90611 0.91219 0.97792 0.93448 0.93186 0.77907 0.89122 0.87206 0.87730 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.11 4.39 6.08 86.38 0.53 4.92 16 3 N -0.59 -28.82 2.47 -830.18 -2.05 -30.87 16 4 C 0.26 14.10 4.75 85.63 0.41 14.51 16 5 C -0.49 -27.77 7.75 25.60 0.20 -27.58 16 6 H 0.03 1.75 7.81 -2.91 -0.02 1.73 16 7 C 0.03 1.66 5.46 84.65 0.46 2.12 16 8 N -0.92 -53.83 13.29 21.45 0.28 -53.54 16 9 Si 0.94 45.04 29.54 68.60 2.03 47.06 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 C 0.59 28.42 7.62 86.63 0.66 29.08 16 14 O -0.60 -29.36 16.50 -4.10 -0.07 -29.43 16 15 C -0.10 -4.49 6.55 40.50 0.27 -4.23 16 16 C 0.03 1.12 11.27 83.72 0.94 2.07 16 17 N -0.45 -12.05 3.13 -551.84 -1.73 -13.77 16 18 C 0.07 0.83 11.15 127.77 1.42 2.26 16 19 C 0.16 5.40 12.55 180.10 2.26 7.66 16 20 N -0.44 -20.12 6.84 -188.82 -1.29 -21.41 16 21 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 3.03 8.08 -2.38 -0.02 3.01 16 25 H 0.07 2.80 7.46 -2.39 -0.02 2.78 16 26 H 0.00 0.23 8.04 -2.39 -0.02 0.21 16 27 H 0.05 2.75 5.84 -2.39 -0.01 2.73 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.23 6.11 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -75.05 286.99 6.16 -68.90 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.09 Total: 6.66 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 7.88 Total: 26.41 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -4.78 Total: -119.60 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.05 6.16 -68.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230161770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.747 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds