Wall clock time and date at job start Mon Mar 30 2020 17:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 H 1.09008 * 109.46791 * 54.99794 * 3 2 1 5 5 C 1.50700 * 109.47251 * 174.99862 * 3 2 1 6 6 H 1.08001 * 119.99535 * 120.00041 * 5 3 2 7 7 C 1.37872 * 119.99895 * 300.00246 * 5 3 2 8 8 N 1.31511 * 119.99760 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00307 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47295 * 89.99736 * 9 7 5 11 11 H 1.48501 * 109.46962 * 210.00040 * 9 7 5 12 12 H 1.48495 * 109.46951 * 329.99639 * 9 7 5 13 13 N 1.46501 * 109.47074 * 295.00218 * 3 2 1 14 14 C 1.34780 * 119.99911 * 85.00291 * 13 3 2 15 15 O 1.21678 * 120.00064 * 5.27260 * 14 13 3 16 16 C 1.46766 * 119.99916 * 185.28079 * 14 13 3 17 17 C 1.36666 * 126.84295 * 5.05274 * 16 14 13 18 18 N 1.33316 * 107.78228 * 180.22610 * 17 16 14 19 19 C 1.30855 * 109.69061 * 359.77531 * 18 17 16 20 20 N 1.34498 * 109.16072 * 359.97438 * 19 18 17 21 21 C 1.46496 * 126.47315 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46938 * 300.00145 * 1 2 3 24 24 H 1.09005 * 109.47049 * 59.99716 * 1 2 3 25 25 H 1.09008 * 109.46947 * 240.00087 * 2 1 3 26 26 H 1.08997 * 109.46949 * 120.00936 * 2 1 3 27 27 H 0.97002 * 120.00264 * 180.02562 * 8 7 5 28 28 H 0.96998 * 119.99897 * 264.99775 * 13 3 2 29 29 H 1.07998 * 126.11077 * 359.97438 * 17 16 14 30 30 H 1.08000 * 125.42504 * 179.97438 * 19 18 17 31 31 H 1.08994 * 109.47571 * 85.11250 * 21 20 19 32 32 H 1.09002 * 109.47000 * 325.10395 * 21 20 19 33 33 H 1.09004 * 109.47297 * 205.10995 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1087 2.5700 10 1 2.8755 -1.3274 2.2633 11 1 3.7937 0.2345 3.8751 12 1 1.7878 0.8071 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3049 2.7173 -0.4025 16 6 0.0024 3.2180 -2.6554 17 6 0.6739 3.1497 -3.8437 18 7 -0.0589 3.7794 -4.7623 19 6 -1.1565 4.2349 -4.2143 20 7 -1.1666 3.9089 -2.9095 21 6 -2.2158 4.2317 -1.9394 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 5.8771 0.4809 2.1124 28 1 2.2720 2.1231 -1.9978 29 1 1.6295 2.6743 -4.0084 30 1 -1.9310 4.7851 -4.7280 31 1 -2.9981 3.4740 -1.9846 32 1 -2.6408 5.2074 -2.1750 33 1 -1.7892 4.2538 -0.9365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233868718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:29 Heat of formation + Delta-G solvation = 25.937051 kcal Electronic energy + Delta-G solvation = -17059.473611 eV Core-core repulsion = 14314.574113 eV Total energy + Delta-G solvation = -2744.899497 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.07678 -38.94016 -35.46675 -33.97059 -32.48013 -31.74514 -29.64035 -27.43550 -27.06462 -23.41390 -22.47518 -21.38753 -20.23633 -19.60554 -17.97151 -16.64931 -15.98612 -15.65796 -15.56437 -14.82227 -14.15971 -13.99655 -13.69228 -13.33038 -13.04283 -12.91094 -12.70264 -12.43159 -11.96333 -11.85249 -11.15573 -10.93885 -10.68319 -10.21532 -9.97768 -9.68082 -9.63101 -9.33123 -9.23050 -8.79309 -8.56222 -8.12002 -6.23217 -4.26208 1.52054 2.63181 2.97176 3.20975 3.33242 3.37071 3.73368 3.91906 4.28771 4.57721 4.75687 5.00841 5.09856 5.14668 5.30606 5.47998 5.59644 5.89524 5.96409 6.09125 6.18989 6.54638 6.61121 6.63790 6.77113 6.86995 7.08070 7.19467 7.22935 7.45607 7.92161 8.10626 8.45621 8.71232 8.82598 9.36615 10.88770 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.006954 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.889773 B = 4025.553904 C = 4388.776737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.684 5.684 14 C 0.582 3.418 15 O -0.557 6.557 16 C -0.073 4.073 17 C 0.028 3.972 18 N -0.499 5.499 19 C 0.191 3.809 20 N -0.429 5.429 21 C 0.067 3.933 22 H 0.034 0.966 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.268 0.732 28 H 0.398 0.602 29 H 0.179 0.821 30 H 0.208 0.792 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 4.167 -7.147 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.332 5.332 14 C 0.367 3.633 15 O -0.438 6.438 16 C -0.190 4.190 17 C -0.125 4.125 18 N -0.217 5.217 19 C -0.091 4.091 20 N -0.110 5.110 21 C -0.075 4.075 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.232 0.768 29 H 0.196 0.804 30 H 0.225 0.775 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.550 4.259 -7.014 15.841 hybrid contribution -0.403 -0.563 1.157 1.348 sum -13.953 3.696 -5.858 15.578 Atomic orbital electron populations 1.21853 0.97135 0.99277 1.01906 1.22306 0.94218 0.99914 1.01399 1.19208 0.95863 0.88384 0.82393 0.93003 1.21028 0.88424 1.39984 1.07997 0.89999 1.24820 0.94866 0.95119 0.97622 1.69862 1.08667 1.44330 1.29821 0.86915 0.80953 0.79971 0.80974 1.20193 1.22111 1.18485 1.45897 1.13780 1.55096 1.18382 1.16786 0.82893 0.78381 0.85224 1.90733 1.54311 1.59614 1.39136 1.21191 0.91175 1.08695 0.97927 1.22673 1.00510 1.01478 0.87887 1.70106 1.04237 1.14812 1.32582 1.25030 0.99431 1.03507 0.81121 1.45238 1.16082 1.39669 1.10012 1.22273 0.89614 1.01433 0.94188 0.94700 0.92869 0.93307 0.92022 0.92542 0.92225 0.76774 0.80370 0.77505 0.90355 0.89870 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.58 37.16 0.32 -2.51 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.17 16 3 C 0.24 5.66 1.84 -69.08 -0.13 5.53 16 4 H 0.05 1.32 6.56 -51.92 -0.34 0.98 16 5 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 6 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 9 Si 0.88 21.34 24.41 -169.99 -4.15 17.19 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.68 -13.42 5.00 -56.21 -0.28 -13.70 16 14 C 0.58 10.95 6.15 -12.81 -0.08 10.88 16 15 O -0.56 -11.60 12.40 5.21 0.06 -11.53 16 16 C -0.07 -1.17 6.91 -82.14 -0.57 -1.73 16 17 C 0.03 0.42 11.36 -17.48 -0.20 0.22 16 18 N -0.50 -7.36 11.20 -14.43 -0.16 -7.52 16 19 C 0.19 2.29 12.52 -90.57 -1.13 1.16 16 20 N -0.43 -5.72 3.17 -121.98 -0.39 -6.11 16 21 C 0.07 0.69 10.78 59.84 0.65 1.34 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 1.09 7.92 -51.93 -0.41 0.68 16 24 H 0.05 0.94 5.76 -51.93 -0.30 0.64 16 25 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 26 H 0.06 1.29 3.21 -51.93 -0.17 1.12 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.40 6.97 7.53 -40.82 -0.31 6.66 16 29 H 0.18 2.31 7.50 -52.49 -0.39 1.91 16 30 H 0.21 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.11 1.39 6.32 -51.93 -0.33 1.07 16 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -31.98 270.34 -5.73 -37.70 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -3.96 Total: 5.91 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.70 Total: -0.72 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.06 Total: -52.62 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.06 Total: -11.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.98 -5.73 -37.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.641 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds