Wall clock time and date at job start Mon Mar 30 2020 17:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 H 1.09008 * 109.46791 * 54.99794 * 3 2 1 5 5 C 1.50700 * 109.47251 * 174.99862 * 3 2 1 6 6 H 1.08001 * 119.99535 * 120.00041 * 5 3 2 7 7 C 1.37872 * 119.99895 * 300.00246 * 5 3 2 8 8 N 1.31511 * 119.99760 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00307 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47295 * 89.99736 * 9 7 5 11 11 H 1.48501 * 109.46962 * 210.00040 * 9 7 5 12 12 H 1.48495 * 109.46951 * 329.99639 * 9 7 5 13 13 N 1.46501 * 109.47074 * 295.00218 * 3 2 1 14 14 C 1.34780 * 119.99911 * 85.00291 * 13 3 2 15 15 O 1.21678 * 120.00064 * 5.27260 * 14 13 3 16 16 C 1.46766 * 119.99916 * 185.28079 * 14 13 3 17 17 C 1.36666 * 126.84295 * 5.05274 * 16 14 13 18 18 N 1.33316 * 107.78228 * 180.22610 * 17 16 14 19 19 C 1.30855 * 109.69061 * 359.77531 * 18 17 16 20 20 N 1.34498 * 109.16072 * 359.97438 * 19 18 17 21 21 C 1.46496 * 126.47315 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46938 * 300.00145 * 1 2 3 24 24 H 1.09005 * 109.47049 * 59.99716 * 1 2 3 25 25 H 1.09008 * 109.46947 * 240.00087 * 2 1 3 26 26 H 1.08997 * 109.46949 * 120.00936 * 2 1 3 27 27 H 0.97002 * 120.00264 * 180.02562 * 8 7 5 28 28 H 0.96998 * 119.99897 * 264.99775 * 13 3 2 29 29 H 1.07998 * 126.11077 * 359.97438 * 17 16 14 30 30 H 1.08000 * 125.42504 * 179.97438 * 19 18 17 31 31 H 1.08994 * 109.47571 * 85.11250 * 21 20 19 32 32 H 1.09002 * 109.47000 * 325.10395 * 21 20 19 33 33 H 1.09004 * 109.47297 * 205.10995 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1087 2.5700 10 1 2.8755 -1.3274 2.2633 11 1 3.7937 0.2345 3.8751 12 1 1.7878 0.8071 2.6387 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3049 2.7173 -0.4025 16 6 0.0024 3.2180 -2.6554 17 6 0.6739 3.1497 -3.8437 18 7 -0.0589 3.7794 -4.7623 19 6 -1.1565 4.2349 -4.2143 20 7 -1.1666 3.9089 -2.9095 21 6 -2.2158 4.2317 -1.9394 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 5.8771 0.4809 2.1124 28 1 2.2720 2.1231 -1.9978 29 1 1.6295 2.6743 -4.0084 30 1 -1.9310 4.7851 -4.7280 31 1 -2.9981 3.4740 -1.9846 32 1 -2.6408 5.2074 -2.1750 33 1 -1.7892 4.2538 -0.9365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233868718.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:28 Heat of formation + Delta-G solvation = 3.486200 kcal Electronic energy + Delta-G solvation = -17060.447153 eV Core-core repulsion = 14314.574113 eV Total energy + Delta-G solvation = -2745.873039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15045 -40.47986 -37.16522 -35.04707 -34.36453 -33.42599 -30.91896 -29.23937 -27.95651 -25.03952 -24.06229 -22.54006 -21.71508 -21.11912 -19.40683 -18.27738 -17.54566 -17.00382 -16.92543 -16.25625 -15.86363 -15.24230 -15.01602 -14.91168 -14.44141 -14.13757 -13.81791 -13.75615 -13.65391 -13.53463 -12.98015 -12.76999 -12.41795 -11.86848 -11.47769 -11.29195 -11.25732 -10.86749 -10.78573 -10.67616 -9.92198 -9.56390 -8.37456 -6.43664 0.35238 1.28011 1.35980 1.45442 1.60271 1.89175 2.26432 2.37823 2.54070 2.98203 3.63049 3.86663 3.99761 4.14578 4.21167 4.30203 4.40406 4.42907 4.50614 4.73343 4.80877 4.98669 5.07430 5.14702 5.21428 5.37346 5.45333 5.49740 5.61000 6.12938 6.15958 6.57903 6.75993 6.92027 7.17327 7.34627 8.77770 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038778 B = 0.006954 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.889773 B = 4025.553904 C = 4388.776737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.254 3.746 4 H 0.028 0.972 5 C -0.536 4.536 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.933 5.933 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.258 1.258 13 N -0.688 5.688 14 C 0.585 3.415 15 O -0.581 6.581 16 C -0.106 4.106 17 C 0.034 3.966 18 N -0.529 5.529 19 C 0.217 3.783 20 N -0.432 5.432 21 C 0.065 3.935 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.270 0.730 28 H 0.406 0.594 29 H 0.188 0.812 30 H 0.259 0.741 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 4.300 -8.176 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.149 3.851 4 H 0.046 0.954 5 C -0.574 4.574 6 H 0.074 0.926 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.182 1.182 13 N -0.336 5.336 14 C 0.373 3.627 15 O -0.463 6.463 16 C -0.223 4.223 17 C -0.120 4.120 18 N -0.248 5.248 19 C -0.065 4.065 20 N -0.112 5.112 21 C -0.076 4.076 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.242 0.758 29 H 0.205 0.795 30 H 0.274 0.726 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.001 4.399 -8.059 18.448 hybrid contribution 0.317 -0.483 1.352 1.470 sum -15.683 3.916 -6.707 17.501 Atomic orbital electron populations 1.21730 0.95262 1.00812 1.01266 1.22222 0.95825 0.98335 1.01316 1.18831 0.93359 0.89615 0.83291 0.95421 1.21269 0.90252 1.38758 1.07086 0.92576 1.25552 0.95759 0.95833 0.99851 1.69977 1.10336 1.46024 1.30873 0.86031 0.79372 0.80000 0.78233 1.18428 1.22106 1.18195 1.45697 1.14745 1.55649 1.17516 1.17048 0.82030 0.77550 0.86094 1.90716 1.54798 1.60464 1.40336 1.20772 0.93380 1.11453 0.96694 1.22925 1.00773 1.00644 0.87651 1.70159 1.05552 1.16118 1.32962 1.26035 0.99070 1.01018 0.80370 1.45470 1.15697 1.39069 1.11012 1.22442 0.88806 1.04156 0.92216 0.92000 0.94085 0.93361 0.91180 0.93463 0.92047 0.75795 0.79459 0.72572 0.89114 0.85741 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.58 71.98 0.62 -4.37 16 2 C -0.14 -5.86 5.11 30.59 0.16 -5.70 16 3 C 0.25 11.81 1.84 44.24 0.08 11.89 16 4 H 0.03 1.44 6.56 -2.38 -0.02 1.42 16 5 C -0.54 -29.04 9.31 25.60 0.24 -28.80 16 6 H 0.06 3.25 7.98 -2.91 -0.02 3.23 16 7 C 0.03 1.68 5.45 84.65 0.46 2.14 16 8 N -0.93 -55.85 13.96 21.44 0.30 -55.55 16 9 Si 0.94 44.12 24.41 68.60 1.67 45.80 16 10 H -0.26 -11.43 6.83 99.48 0.68 -10.75 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.26 -11.92 6.53 99.48 0.65 -11.27 16 13 N -0.69 -27.16 5.00 -449.99 -2.25 -29.41 16 14 C 0.59 21.92 6.15 86.47 0.53 22.45 16 15 O -0.58 -24.18 12.40 -4.28 -0.05 -24.23 16 16 C -0.11 -3.29 6.91 40.01 0.28 -3.01 16 17 C 0.03 0.99 11.36 84.10 0.96 1.94 16 18 N -0.53 -14.27 11.20 -199.56 -2.24 -16.50 16 19 C 0.22 4.38 12.52 180.33 2.26 6.64 16 20 N -0.43 -10.40 3.17 -539.82 -1.71 -12.12 16 21 C 0.06 1.17 10.78 127.77 1.38 2.54 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.04 1.62 7.92 -2.39 -0.02 1.60 16 24 H 0.05 1.80 5.76 -2.38 -0.01 1.78 16 25 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 26 H 0.05 2.08 3.21 -2.39 -0.01 2.08 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.41 14.44 7.53 -92.71 -0.70 13.75 16 29 H 0.19 4.73 7.50 -2.91 -0.02 4.70 16 30 H 0.26 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.95 6.32 -2.39 -0.02 1.94 16 Total: -1.00 -69.96 270.34 3.03 -66.94 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.35 Total: 19.36 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.95 Total: 5.72 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -5.90 Total: -113.58 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.23 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.67 Total: 45.80 kcal Total: -69.96 3.03 -66.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868718.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.422 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds