Wall clock time and date at job start Mon Mar 30 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47842 * 110.99913 * 2 1 4 4 C 1.54903 * 104.79657 * 146.36273 * 3 2 1 5 5 C 1.55147 * 101.65238 * 322.93446 * 4 3 2 6 6 C 1.47442 * 110.99841 * 120.84737 * 2 1 3 7 7 H 1.08997 * 109.88716 * 117.33722 * 6 2 1 8 8 C 1.50697 * 109.88929 * 356.30930 * 6 2 1 9 9 O 1.21291 * 120.00008 * 312.36766 * 8 6 2 10 10 N 1.34780 * 119.99963 * 132.37158 * 8 6 2 11 11 C 1.37094 * 119.99895 * 183.19238 * 10 8 6 12 12 H 1.07999 * 120.00253 * 7.05768 * 11 10 8 13 13 C 1.38951 * 119.99809 * 187.06112 * 11 10 8 14 14 N 1.31411 * 120.00058 * 31.04620 * 13 11 10 15 15 Si 1.86795 * 119.99943 * 211.04885 * 13 11 10 16 16 H 1.48508 * 109.47224 * 94.98932 * 15 13 11 17 17 H 1.48494 * 109.47391 * 214.98991 * 15 13 11 18 18 H 1.48502 * 109.47176 * 334.99347 * 15 13 11 19 19 C 1.46501 * 119.99878 * 3.18977 * 10 8 6 20 20 C 1.47202 * 109.46984 * 83.96112 * 19 10 8 21 21 N 5.49983 * 115.49823 * 126.76948 * 2 1 3 22 22 H 1.09004 * 109.47125 * 310.84612 * 1 2 3 23 23 H 1.08997 * 109.47494 * 70.84134 * 1 2 3 24 24 H 1.09001 * 109.47609 * 190.84343 * 1 2 3 25 25 H 1.08995 * 110.38067 * 265.19450 * 3 2 1 26 26 H 1.09008 * 110.37534 * 27.53831 * 3 2 1 27 27 H 1.09005 * 110.99058 * 81.01849 * 4 3 2 28 28 H 1.08997 * 110.99790 * 204.80433 * 4 3 2 29 29 H 1.08997 * 110.70608 * 277.26395 * 5 4 3 30 30 H 1.09000 * 110.70527 * 154.03353 * 5 4 3 31 31 H 0.96999 * 120.00074 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.46914 * 203.96432 * 19 10 8 33 33 H 1.08997 * 109.47157 * 323.96925 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2821 1.9315 6 6 1.9974 -0.7058 1.1818 7 1 2.5697 -1.5785 0.8673 8 6 0.8608 -1.1327 2.0745 9 8 -0.0128 -0.3427 2.3639 10 7 0.8152 -2.3925 2.5515 11 6 -0.2518 -2.8001 3.3097 12 1 -1.1075 -2.1523 3.4303 13 6 -0.2323 -4.0468 3.9231 14 7 0.9084 -4.5684 4.3151 15 14 -1.8274 -4.9812 4.1905 16 1 -2.0394 -5.9302 3.0681 17 1 -1.7518 -5.7344 5.4680 18 1 -2.9595 -4.0218 4.2478 19 6 1.9057 -3.3262 2.2596 20 6 2.9956 -3.1260 3.2287 21 7 3.8366 -2.9715 3.9765 22 1 -0.3633 0.6721 0.7774 23 1 -0.3634 0.3372 -0.9707 24 1 -0.3634 -1.0093 0.1933 25 1 2.2147 1.7039 -1.0181 26 1 1.2889 2.0593 0.4725 27 1 4.1302 0.9281 0.2243 28 1 3.5498 2.2721 1.2635 29 1 2.3744 0.7745 2.7392 30 1 3.8000 -0.2280 2.3136 31 1 0.9221 -5.4388 4.7430 32 1 1.5374 -4.3494 2.3332 33 1 2.2785 -3.1458 1.2514 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264971673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:17 Heat of formation + Delta-G solvation = 27.536105 kcal Electronic energy + Delta-G solvation = -17583.378167 eV Core-core repulsion = 14838.548010 eV Total energy + Delta-G solvation = -2744.830157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.98461 -37.35129 -35.74344 -34.42248 -32.06249 -31.57251 -29.12071 -27.48253 -25.29151 -24.75168 -21.62728 -20.95165 -18.71270 -17.93600 -16.97673 -16.28755 -15.35788 -15.18618 -14.60249 -14.28899 -13.86393 -13.56826 -13.11476 -12.84533 -12.54195 -12.27877 -11.95221 -11.64355 -11.54560 -11.26706 -11.12150 -11.04374 -10.94663 -10.78438 -10.63606 -10.48718 -10.41945 -10.14229 -9.20407 -8.95932 -8.16821 -7.65762 -6.62183 -3.96494 3.03749 3.20366 3.24682 3.42283 3.64355 3.87353 4.05966 4.46537 4.67397 4.80222 4.89826 5.00334 5.15651 5.33462 5.54866 5.63228 5.73800 5.94920 5.99585 6.01283 6.07005 6.15771 6.22226 6.39356 6.46583 6.52293 6.70763 7.26923 7.38028 7.41538 7.81906 8.22707 8.60428 8.94365 9.14855 9.68787 10.43618 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030173 B = 0.009171 C = 0.007529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.769597 B = 3052.240298 C = 3717.958491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.513 5.513 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.125 4.125 6 C 0.052 3.948 7 H 0.094 0.906 8 C 0.440 3.560 9 O -0.574 6.574 10 N -0.434 5.434 11 C -0.322 4.322 12 H 0.113 0.887 13 C 0.037 3.963 14 N -0.862 5.862 15 Si 0.918 3.082 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.268 1.268 19 C 0.208 3.792 20 C 0.241 3.759 21 N -0.468 5.468 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.274 0.726 32 H 0.136 0.864 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 3.718 -8.517 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.238 5.238 3 C -0.087 4.087 4 C -0.164 4.164 5 C -0.164 4.164 6 C -0.060 4.060 7 H 0.112 0.888 8 C 0.228 3.772 9 O -0.458 6.458 10 N -0.154 5.154 11 C -0.449 4.449 12 H 0.130 0.870 13 C -0.168 4.168 14 N -0.500 5.500 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.192 1.192 19 C 0.081 3.919 20 C -0.078 4.078 21 N -0.147 5.147 22 H 0.084 0.916 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.273 3.892 -7.612 9.155 hybrid contribution -1.261 -0.431 0.855 1.583 sum 2.012 3.461 -6.757 7.854 Atomic orbital electron populations 1.22866 0.86846 1.03423 1.00188 1.63974 1.09432 1.13755 1.36634 1.23088 0.95577 0.90249 0.99813 1.22685 0.97701 0.99122 0.96931 1.22665 0.99028 0.96570 0.98182 1.22567 0.95193 0.98350 0.89843 0.88793 1.20292 0.88710 0.82071 0.86087 1.90504 1.41441 1.51042 1.62814 1.43820 1.17715 1.08664 1.45183 1.19749 0.95463 1.00918 1.28738 0.86977 1.25212 0.98445 0.97839 0.95322 1.70095 1.26154 1.18624 1.35109 0.86036 0.82283 0.79588 0.77667 1.20032 1.21142 1.19209 1.19041 0.82413 0.99123 0.91359 1.29478 0.92671 0.91876 0.93765 1.80917 1.14040 1.09883 1.09884 0.91633 0.93394 0.91390 0.90521 0.93385 0.90783 0.91035 0.90788 0.90850 0.91547 0.84662 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.15 60.06 0.49 0.75 16 2 N -0.51 -8.70 5.44 -232.95 -1.27 -9.97 16 3 C 0.04 0.59 6.72 -2.30 -0.02 0.57 16 4 C -0.13 -1.70 7.08 -24.59 -0.17 -1.87 16 5 C -0.13 -2.12 6.46 -24.90 -0.16 -2.28 16 6 C 0.05 0.95 3.40 -67.88 -0.23 0.71 16 7 H 0.09 1.59 5.49 -51.93 -0.29 1.30 16 8 C 0.44 9.83 4.77 -10.99 -0.05 9.78 16 9 O -0.57 -14.49 13.15 5.55 0.07 -14.42 16 10 N -0.43 -10.05 2.60 -117.94 -0.31 -10.36 16 11 C -0.32 -8.21 9.38 -14.93 -0.14 -8.35 16 12 H 0.11 3.06 7.36 -52.49 -0.39 2.67 16 13 C 0.04 0.89 4.74 -17.47 -0.08 0.81 16 14 N -0.86 -21.26 9.86 55.50 0.55 -20.72 16 15 Si 0.92 19.18 29.65 -169.99 -5.04 14.14 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 C 0.21 4.14 4.83 -6.83 -0.03 4.11 16 20 C 0.24 5.24 14.13 -20.76 -0.29 4.94 16 21 N -0.47 -10.86 18.54 42.15 0.78 -10.08 16 22 H 0.07 1.31 5.83 -51.93 -0.30 1.01 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.72 7.60 -51.92 -0.39 0.33 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.14 2.77 5.97 -51.93 -0.31 2.46 16 33 H 0.09 1.43 5.98 -51.93 -0.31 1.12 16 LS Contribution 272.05 15.07 4.10 4.10 Total: -1.00 -28.91 272.05 -5.80 -34.71 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.99 Total: 3.42 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.69 Total: 9.18 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.25 Total: -51.12 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.07 Total: -14.42 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.04 Total: 14.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.91 -5.80 -34.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264971673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.243 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds