Wall clock time and date at job start Mon Mar 30 2020 17:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47302 * 2 1 4 4 C 1.46498 * 120.00099 * 270.00567 * 3 2 1 5 5 C 1.50707 * 109.46808 * 269.99709 * 4 3 2 6 6 H 1.07996 * 119.99731 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99809 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99770 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99692 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47130 * 90.00098 * 9 7 5 11 11 H 1.48498 * 109.47173 * 209.99414 * 9 7 5 12 12 H 1.48500 * 109.47554 * 329.99900 * 9 7 5 13 13 C 1.34781 * 119.99879 * 89.99969 * 3 2 1 14 14 O 1.21277 * 119.99965 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99953 * 0.02562 * 13 3 2 16 16 C 1.50699 * 109.46695 * 180.02562 * 15 13 3 17 17 C 1.35315 * 126.13139 * 85.00382 * 16 15 13 18 18 C 1.39870 * 107.92205 * 179.72875 * 17 16 15 19 19 N 1.30839 * 108.19862 * 359.97438 * 18 17 16 20 20 N 1.34948 * 126.12278 * 264.67889 * 16 15 13 21 21 H 0.96997 * 126.03916 * 0.27587 * 20 16 15 22 22 H 1.08999 * 109.46925 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46996 * 299.99833 * 1 2 3 24 24 H 1.09001 * 109.47128 * 59.99571 * 1 2 3 25 25 H 1.09001 * 109.46996 * 240.00167 * 2 1 3 26 26 H 1.09001 * 109.47128 * 120.00429 * 2 1 3 27 27 H 1.08999 * 109.47316 * 29.99176 * 4 3 2 28 28 H 1.09002 * 109.47402 * 150.00216 * 4 3 2 29 29 H 0.97005 * 119.99590 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47102 * 59.99531 * 15 13 3 31 31 H 1.08998 * 109.46785 * 299.99836 * 15 13 3 32 32 H 1.08001 * 126.03507 * 359.74559 * 17 16 15 33 33 H 1.07997 * 125.89701 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1494 2.3906 -2.8775 8 7 3.3493 3.1266 -3.6175 9 14 5.9137 2.0976 -3.4164 10 1 5.9775 0.8769 -4.2597 11 1 6.3927 3.2653 -4.1989 12 1 6.7737 1.9176 -2.2192 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9924 1.3059 2.4724 16 6 2.3181 2.2295 3.6177 17 6 1.4879 3.1488 4.1623 18 6 2.1740 3.7867 5.2010 19 7 3.3729 3.2684 5.2775 20 7 3.4881 2.2835 4.2881 21 1 4.2705 1.7368 4.1155 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.5817 1.6877 -2.0284 28 1 2.0956 3.1411 -1.1383 29 1 3.6754 3.5171 -4.4434 30 1 2.6228 0.4186 2.5298 31 1 0.9445 1.0114 2.5302 32 1 0.4745 3.3536 3.8502 33 1 1.7815 4.5708 5.8314 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267896926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:41:34 Heat of formation + Delta-G solvation = 7.957893 kcal Electronic energy + Delta-G solvation = -16697.101653 eV Core-core repulsion = 13951.422521 eV Total energy + Delta-G solvation = -2745.679132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17859 -40.50934 -36.95146 -34.97452 -33.59072 -31.97706 -31.51329 -29.64743 -28.01806 -24.92084 -24.09001 -22.63070 -21.51873 -20.04639 -18.63369 -18.31137 -17.89402 -17.06749 -16.37348 -16.00213 -15.37820 -15.08597 -14.71418 -14.65036 -14.37376 -14.28524 -13.81751 -13.45508 -13.25036 -13.02283 -12.88636 -12.67474 -12.46496 -12.15511 -11.82077 -11.72322 -11.64254 -10.79037 -10.65038 -10.40713 -9.54200 -9.43024 -8.23401 -6.38027 0.88392 1.34690 1.37848 1.47471 1.82473 1.86753 2.02127 2.33244 2.52264 3.06391 3.55749 3.83659 3.99525 4.09809 4.22618 4.45645 4.53908 4.70052 4.73330 4.82543 4.99531 5.04490 5.09731 5.21591 5.24861 5.46045 5.57970 5.75720 5.86280 6.05981 6.38031 6.69709 6.72987 6.81137 7.27860 7.48853 8.83597 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.006762 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.200747 B = 4139.824693 C = 4789.376122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.274 1.274 13 C 0.499 3.501 14 O -0.593 6.593 15 C -0.067 4.067 16 C 0.106 3.894 17 C -0.276 4.276 18 C 0.045 3.955 19 N -0.329 5.329 20 N -0.473 5.473 21 H 0.442 0.558 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.023 0.977 28 H -0.006 1.006 29 H 0.267 0.733 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -9.207 12.996 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.026 4.026 3 N -0.331 5.331 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.287 3.713 14 O -0.474 6.474 15 C -0.108 4.108 16 C -0.024 4.024 17 C -0.305 4.305 18 C -0.140 4.140 19 N -0.152 5.152 20 N -0.183 5.183 21 H 0.287 0.713 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.089 0.911 26 H 0.126 0.874 27 H 0.041 0.959 28 H 0.012 0.988 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.170 0.830 32 H 0.176 0.824 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.703 -8.494 13.438 16.579 hybrid contribution 0.523 0.181 -1.385 1.492 sum -4.180 -8.313 12.053 15.226 Atomic orbital electron populations 1.22180 0.94508 1.03593 1.01876 1.21828 0.95398 0.81053 1.04285 1.48254 1.63742 1.15213 1.05923 1.18689 0.95195 0.91499 0.80586 1.21727 0.97965 1.31871 1.06448 0.92737 1.25858 1.02295 0.94535 0.96573 1.70053 1.37775 1.34238 1.14805 0.85438 0.79099 0.78207 0.78199 1.18626 1.20874 1.19865 1.21035 0.77538 0.86509 0.86252 1.90698 1.47891 1.20796 1.88001 1.20440 1.07696 0.97076 0.85581 1.20723 0.87484 0.99353 0.94870 1.21528 1.03530 1.02678 1.02805 1.24345 0.90912 1.00107 0.98630 1.77201 1.21096 1.05395 1.11534 1.46330 1.13264 1.31732 1.26938 0.71286 0.88592 0.91523 0.94614 0.91110 0.87396 0.95917 0.98763 0.92456 0.84798 0.83035 0.82385 0.77149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 10.24 71.98 0.74 -2.76 16 2 C 0.10 2.58 5.93 86.38 0.51 3.09 16 3 N -0.60 -23.81 2.46 -826.14 -2.03 -25.84 16 4 C 0.26 13.90 5.16 85.64 0.44 14.34 16 5 C -0.54 -30.87 9.39 25.60 0.24 -30.63 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.36 5.46 84.66 0.46 0.82 16 8 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 9 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.50 19.39 7.67 87.66 0.67 20.06 16 14 O -0.59 -30.42 15.61 -3.02 -0.05 -30.46 16 15 C -0.07 -1.62 4.80 29.10 0.14 -1.48 16 16 C 0.11 2.98 5.70 41.40 0.24 3.22 16 17 C -0.28 -7.65 10.72 21.99 0.24 -7.41 16 18 C 0.05 1.22 12.03 85.24 1.03 2.24 16 19 N -0.33 -10.13 12.70 -57.02 -0.72 -10.85 16 20 N -0.47 -13.51 7.36 -48.00 -0.35 -13.86 16 21 H 0.44 10.45 8.96 -213.34 -1.91 8.54 16 22 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.24 7.22 -2.39 -0.02 1.22 16 24 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 26 H 0.11 1.97 6.44 -2.39 -0.02 1.95 16 27 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 28 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 29 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.13 2.32 7.40 -2.39 -0.02 2.30 16 31 H 0.15 2.55 7.19 -2.39 -0.02 2.53 16 32 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -79.65 288.65 3.07 -76.58 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.79 Total: 12.15 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 4.70 Total: 1.50 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -2.82 Total: -106.62 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.46 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.65 3.07 -76.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267896926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.539 kcal (2) G-P(sol) polarization free energy of solvation -79.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds