Wall clock time and date at job start Mon Mar 30 2020 17:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46508 * 109.47194 * 2 1 4 4 C 1.36939 * 119.99694 * 94.58563 * 3 2 1 5 5 H 1.07996 * 120.00555 * 37.56664 * 4 3 2 6 6 C 1.38817 * 119.99313 * 217.84534 * 4 3 2 7 7 N 1.31614 * 119.99485 * 211.86502 * 6 4 3 8 8 Si 1.86804 * 120.00113 * 31.86902 * 6 4 3 9 9 H 1.48501 * 109.46978 * 86.07205 * 8 6 4 10 10 H 1.48500 * 109.47033 * 206.06693 * 8 6 4 11 11 H 1.48501 * 109.46914 * 326.07120 * 8 6 4 12 12 C 1.46492 * 119.99879 * 274.58381 * 3 2 1 13 13 C 1.50708 * 109.47110 * 275.35277 * 12 3 2 14 14 N 1.31130 * 126.55139 * 89.99852 * 13 12 3 15 15 C 1.34492 * 105.61649 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.28973 * 179.97438 * 15 14 13 17 17 C 1.52999 * 117.50213 * 188.62936 * 16 15 14 18 18 C 1.52999 * 117.49402 * 120.00383 * 16 15 14 19 19 N 1.29946 * 107.42499 * 0.02562 * 15 14 13 20 20 O 1.21306 * 110.24955 * 359.69576 * 19 15 14 21 21 H 1.09007 * 109.47313 * 64.92216 * 1 2 3 22 22 H 1.08997 * 109.47278 * 184.92666 * 1 2 3 23 23 H 1.09005 * 109.47260 * 304.92717 * 1 2 3 24 24 H 1.08993 * 109.47483 * 239.99994 * 2 1 3 25 25 H 1.09004 * 109.47325 * 120.00019 * 2 1 3 26 26 H 0.97012 * 119.99517 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47581 * 35.35151 * 12 3 2 28 28 H 1.09000 * 109.47085 * 155.35834 * 12 3 2 29 29 H 1.08998 * 115.55140 * 334.34284 * 16 15 14 30 30 H 1.09000 * 117.49459 * 359.97438 * 17 16 15 31 31 H 1.08991 * 117.50031 * 145.02351 * 17 16 15 32 32 H 1.09001 * 117.50081 * 214.97801 * 18 16 15 33 33 H 1.08997 * 117.50378 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3359 1.9952 1.1822 5 1 2.8109 1.4326 1.9722 6 6 2.0419 3.3392 1.3671 7 7 2.8194 4.0848 2.1232 8 14 0.5429 4.0894 0.5427 9 1 -0.6507 3.8801 1.4011 10 1 0.7624 5.5450 0.3467 11 1 0.3253 3.4396 -0.7747 12 6 2.1669 2.1056 -1.2646 13 6 3.5040 1.7775 -1.8774 14 7 3.7623 0.7977 -2.7098 15 6 5.0750 0.8939 -2.9861 16 6 5.8627 -0.0092 -3.8998 17 6 7.3838 0.1546 -3.9156 18 6 6.5504 0.6327 -5.1064 19 7 5.5396 1.9081 -2.3197 20 8 4.6520 2.4329 -1.6807 21 1 -0.3634 0.4356 -0.9308 22 1 -0.3634 -1.0238 0.0883 23 1 -0.3634 0.5884 0.8426 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.6138 5.0240 2.2528 27 1 1.3714 1.8097 -1.9485 28 1 2.1059 3.1779 -1.0785 29 1 5.4633 -1.0157 -4.0247 30 1 7.8148 0.9159 -3.2654 31 1 7.9854 -0.7442 -4.0508 32 1 6.6039 0.0483 -6.0250 33 1 6.4328 1.7080 -5.2396 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299346983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:42:47 Heat of formation + Delta-G solvation = 98.558062 kcal Electronic energy + Delta-G solvation = -16937.137354 eV Core-core repulsion = 14195.386940 eV Total energy + Delta-G solvation = -2741.750414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.41291 -38.62084 -38.33829 -36.12150 -34.12268 -33.42610 -31.23529 -28.54743 -26.17075 -25.72966 -24.28418 -23.34718 -22.30403 -21.24195 -19.34037 -18.84716 -18.40443 -17.06794 -16.59744 -16.29849 -16.09477 -15.40967 -15.14128 -14.57498 -14.18130 -13.89528 -13.45613 -13.21169 -13.07558 -12.94194 -12.64646 -12.50316 -12.38851 -12.31512 -12.06362 -11.76206 -11.61416 -11.52236 -11.41499 -10.67594 -10.63501 -9.05426 -8.31306 -5.65803 0.19387 1.20328 1.38344 1.49977 1.55232 2.03107 2.40988 2.59920 2.79847 2.94021 3.21403 3.32358 3.75875 3.86105 3.98513 4.26105 4.37758 4.42502 4.55499 4.66815 4.74897 4.77311 4.81581 4.92412 5.02723 5.06750 5.09245 5.15256 5.23511 5.54554 5.83327 6.14225 6.81640 7.24093 7.47892 7.90183 8.87403 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031326 B = 0.007412 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.618207 B = 3776.929139 C = 4201.183725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 N -0.587 5.587 4 C -0.291 4.291 5 H 0.036 0.964 6 C 0.003 3.997 7 N -0.918 5.918 8 Si 0.917 3.083 9 H -0.284 1.284 10 H -0.295 1.295 11 H -0.225 1.225 12 C 0.222 3.778 13 C 0.187 3.813 14 N -0.503 5.503 15 C 0.192 3.808 16 C -0.098 4.098 17 C -0.153 4.153 18 C -0.139 4.139 19 N -0.420 5.420 20 O 0.046 5.954 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.269 0.731 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.150 0.850 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 -7.566 -13.851 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 N -0.309 5.309 4 C -0.420 4.420 5 H 0.054 0.946 6 C -0.198 4.198 7 N -0.558 5.558 8 Si 0.741 3.259 9 H -0.211 1.211 10 H -0.222 1.222 11 H -0.147 1.147 12 C 0.092 3.908 13 C -0.036 4.036 14 N -0.239 5.239 15 C -0.081 4.081 16 C -0.118 4.118 17 C -0.191 4.191 18 C -0.177 4.177 19 N -0.136 5.136 20 O -0.003 6.003 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.523 -7.507 -13.970 15.932 hybrid contribution -0.524 0.882 0.712 1.249 sum 0.999 -6.625 -13.258 14.855 Atomic orbital electron populations 1.22164 0.96429 1.01787 1.01390 1.21124 0.94061 0.83642 0.99938 1.44217 1.73450 1.12919 1.00295 1.18466 1.35884 0.93999 0.93624 0.94626 1.26107 0.99246 0.96755 0.97686 1.70150 1.35967 1.07008 1.42667 0.86333 0.81501 0.76886 0.81156 1.21071 1.22157 1.14746 1.20589 0.84212 0.98225 0.87786 1.31479 0.93853 0.87542 0.90745 1.71814 1.13305 1.21994 1.16774 1.25558 0.88976 0.95015 0.98537 1.20323 0.94168 0.98187 0.99108 1.23141 0.90284 1.04611 1.01032 1.23158 1.00381 1.01155 0.93014 1.74484 1.13795 1.13810 1.11483 1.85321 1.15760 1.47216 1.52020 0.92543 0.90687 0.94098 0.92475 0.93624 0.92222 0.86185 0.90050 0.83276 0.90014 0.84505 0.84104 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 10.24 71.98 0.74 -4.22 16 2 C 0.14 5.11 6.41 86.37 0.55 5.66 16 3 N -0.59 -26.36 2.03 -706.35 -1.43 -27.79 16 4 C -0.29 -15.84 9.78 84.03 0.82 -15.02 16 5 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 6 C 0.00 0.15 5.04 84.86 0.43 0.58 16 7 N -0.92 -54.99 13.97 21.65 0.30 -54.69 16 8 Si 0.92 40.92 26.49 68.60 1.82 42.73 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.22 -8.61 5.50 99.48 0.55 -8.06 16 12 C 0.22 9.01 4.48 85.64 0.38 9.40 16 13 C 0.19 7.88 8.09 88.38 0.72 8.60 16 14 N -0.50 -19.72 11.55 -303.18 -3.50 -23.22 16 15 C 0.19 7.09 7.74 138.46 1.07 8.16 16 16 C -0.10 -2.54 6.33 -11.54 -0.07 -2.62 16 17 C -0.15 -3.24 10.14 30.60 0.31 -2.93 16 18 C -0.14 -2.73 10.23 30.60 0.31 -2.41 16 19 N -0.42 -17.69 11.77 -60.31 -0.71 -18.40 16 20 O 0.05 2.12 11.31 74.84 0.85 2.96 16 21 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 25 H 0.05 1.78 8.00 -2.39 -0.02 1.76 16 26 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 27 H 0.12 4.06 8.09 -2.39 -0.02 4.04 16 28 H 0.08 3.46 4.47 -2.39 -0.01 3.45 16 29 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.08 2.12 7.91 -2.39 -0.02 2.10 16 31 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.86 285.25 3.53 -62.34 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.94 Total: 10.87 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.26 Total: 5.19 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.34 Total: -124.10 kcal Atomic # 8 Polarization: 2.12 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.82 Total: 42.73 kcal Total: -65.86 3.53 -62.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299346983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.895 kcal (2) G-P(sol) polarization free energy of solvation -65.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds