Wall clock time and date at job start Mon Mar 30 2020 17:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 N 1.46900 * 109.47135 * 64.99733 * 4 2 1 6 6 C 1.46903 * 111.00278 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47324 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00297 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00132 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99569 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00175 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46901 * 90.00096 * 11 9 7 13 13 H 1.48501 * 109.47001 * 209.99658 * 11 9 7 14 14 H 1.48498 * 109.47017 * 330.00215 * 11 9 7 15 15 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 16 16 C 1.38248 * 119.97128 * 239.99664 * 15 2 1 17 17 C 1.38196 * 120.02483 * 179.97438 * 16 15 2 18 18 C 1.38458 * 119.97492 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.02786 * 179.97438 * 18 17 16 20 20 C 1.38465 * 119.94675 * 0.24873 * 18 17 16 21 21 C 1.38197 * 119.97511 * 359.47283 * 20 18 17 22 22 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 23 23 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 24 24 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 26 26 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 27 27 H 1.00901 * 111.00203 * 303.95579 * 5 4 2 28 28 H 1.09007 * 109.46735 * 299.99932 * 6 5 4 29 29 H 1.08993 * 109.47237 * 59.99366 * 6 5 4 30 30 H 0.97004 * 119.99721 * 180.02562 * 10 9 7 31 31 H 1.08001 * 119.98881 * 0.02562 * 16 15 2 32 32 H 1.07995 * 120.01604 * 180.02562 * 17 16 15 33 33 H 1.08007 * 120.01064 * 179.75151 * 20 18 17 34 34 H 1.07994 * 119.98821 * 180.29814 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0376 -2.4456 6 6 2.1246 -0.6269 -3.6673 7 6 1.7086 0.1790 -4.8709 8 1 1.1482 1.0931 -4.7413 9 6 2.0433 -0.2507 -6.1375 10 7 2.7261 -1.3636 -6.2952 11 14 1.5270 0.7478 -7.6294 12 1 2.5866 1.7364 -7.9542 13 1 1.3256 -0.1601 -8.7871 14 1 0.2587 1.4610 -7.3329 15 6 2.0323 -0.7105 1.2303 16 6 2.8272 -0.0381 2.1400 17 6 3.2881 -0.6885 3.2689 18 6 2.9540 -2.0141 3.4885 19 9 3.4044 -2.6510 4.5915 20 6 2.1625 -2.6881 2.5739 21 6 1.6980 -2.0340 1.4486 22 1 -0.3633 0.5138 0.8900 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1262 -0.7994 -1.2058 26 1 1.6053 -1.7197 -1.2953 27 1 0.6527 0.1794 -2.4753 28 1 3.2115 -0.7048 -3.6407 29 1 1.6903 -1.6246 -3.7298 30 1 2.9620 -1.6657 -7.1863 31 1 3.0874 0.9960 1.9687 32 1 3.9087 -0.1630 3.9796 33 1 1.9045 -3.7233 2.7421 34 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309025101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:43:57 Heat of formation + Delta-G solvation = -56.030916 kcal Electronic energy + Delta-G solvation = -15877.822129 eV Core-core repulsion = 13109.448272 eV Total energy + Delta-G solvation = -2768.373857 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.88097 -40.44813 -37.70632 -35.32828 -33.68082 -32.08872 -30.10488 -28.77309 -26.34117 -24.31067 -23.92787 -22.99291 -20.96953 -18.66177 -18.57187 -17.42562 -16.95715 -16.58335 -16.48220 -16.26122 -15.35731 -15.08642 -14.65743 -14.51682 -14.40503 -14.14417 -13.90464 -13.42242 -13.26697 -13.13061 -12.70634 -12.64549 -12.18998 -12.13003 -11.91375 -11.76532 -11.62055 -11.21608 -10.65439 -10.04709 -9.50031 -9.11071 -8.22038 -6.33546 0.16380 0.29600 1.42692 1.44551 1.55786 2.40915 2.61647 3.11518 3.30094 3.50105 3.75817 3.92609 4.01010 4.16109 4.17493 4.36472 4.46865 4.50809 4.78264 4.86079 4.99182 5.02346 5.08150 5.11192 5.17235 5.21182 5.28168 5.30316 5.40133 5.61968 5.67970 5.95071 6.02591 6.44845 6.74170 6.90952 7.37808 8.89694 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052917 B = 0.003982 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.001995 B = 7030.545451 C = 7219.607204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 H 0.090 0.910 4 C 0.070 3.930 5 N -0.687 5.687 6 C 0.207 3.793 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.261 1.261 15 C -0.085 4.085 16 C -0.089 4.089 17 C -0.152 4.152 18 C 0.071 3.929 19 F -0.150 7.150 20 C -0.155 4.155 21 C -0.093 4.093 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.019 0.981 27 H 0.337 0.663 28 H -0.003 1.003 29 H -0.039 1.039 30 H 0.265 0.735 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 1.057 18.451 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 H 0.108 0.892 4 C -0.060 4.060 5 N -0.318 5.318 6 C 0.079 3.921 7 C -0.574 4.574 8 H 0.085 0.915 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.185 1.185 15 C -0.086 4.086 16 C -0.107 4.107 17 C -0.170 4.170 18 C 0.052 3.948 19 F -0.128 7.128 20 C -0.174 4.174 21 C -0.111 4.111 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.156 0.844 28 H 0.015 0.985 29 H -0.022 1.022 30 H 0.074 0.926 31 H 0.169 0.831 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.248 1.342 18.401 18.586 hybrid contribution -0.365 -0.928 -0.790 1.272 sum -2.613 0.414 17.611 17.808 Atomic orbital electron populations 1.21844 0.93304 1.02256 1.02567 1.20064 0.96773 0.99459 0.89589 0.89203 1.21959 0.99476 0.94446 0.90125 1.60560 1.19229 1.50320 1.01722 1.19206 0.94013 0.91288 0.87618 1.21565 1.35503 1.08916 0.91426 0.91496 1.25979 0.94989 0.96232 1.02587 1.70101 1.40137 1.23627 1.23714 0.85310 0.79050 0.78146 0.77654 1.19911 1.20780 1.18493 1.20030 0.97856 0.94483 0.96234 1.21205 0.95815 1.01120 0.92555 1.21355 1.02637 0.93057 0.99961 1.17945 0.99534 0.92151 0.85147 1.91468 1.87761 1.82208 1.51399 1.21306 0.99612 1.01688 0.94762 1.21043 0.99188 0.94248 0.96622 0.90977 0.92203 0.92515 0.93136 0.96263 0.84413 0.98496 1.02170 0.92633 0.83131 0.82900 0.83504 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.78 71.98 0.63 -2.59 16 2 C -0.04 -1.03 2.77 -11.54 -0.03 -1.06 16 3 H 0.09 2.29 7.87 -2.39 -0.02 2.27 16 4 C 0.07 2.40 4.88 86.30 0.42 2.82 16 5 N -0.69 -28.99 6.49 -517.93 -3.36 -32.35 16 6 C 0.21 11.14 5.44 85.56 0.47 11.61 16 7 C -0.54 -30.55 9.32 25.60 0.24 -30.31 16 8 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.00 0.01 5.46 84.65 0.46 0.47 16 10 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 11 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 C -0.09 -1.97 4.78 -19.86 -0.09 -2.07 16 16 C -0.09 -1.81 9.67 22.26 0.22 -1.59 16 17 C -0.15 -2.99 10.03 22.31 0.22 -2.76 16 18 C 0.07 1.58 7.30 22.38 0.16 1.74 16 19 F -0.15 -3.47 17.27 44.97 0.78 -2.69 16 20 C -0.16 -3.31 10.03 22.31 0.22 -3.09 16 21 C -0.09 -2.09 8.76 22.26 0.19 -1.89 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.45 6.68 -2.39 -0.02 1.43 16 24 H 0.06 1.24 7.39 -2.39 -0.02 1.22 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.02 0.67 7.57 -2.39 -0.02 0.65 16 27 H 0.34 13.24 6.97 -89.69 -0.63 12.62 16 28 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 29 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 16 30 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.15 2.46 7.94 -2.91 -0.02 2.44 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.14 2.88 7.16 -2.91 -0.02 2.86 16 Total: -1.00 -64.08 291.50 3.30 -60.77 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.46 Total: 13.44 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.11 Total: -28.72 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -3.08 Total: -88.86 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.08 3.30 -60.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309025101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.743 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds