Wall clock time and date at job start Mon Mar 30 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.46437 * 119.99604 * 2 1 3 13 13 C 1.34776 * 120.00348 * 274.99648 * 12 2 1 14 14 O 1.21284 * 119.99546 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00271 * 180.02562 * 13 12 2 16 16 C 1.50707 * 109.47051 * 180.02562 * 15 13 12 17 17 C 1.39867 * 126.03904 * 269.68740 * 16 15 13 18 18 N 1.30834 * 108.20368 * 179.81723 * 17 16 15 19 19 N 1.40088 * 108.20428 * 0.43936 * 18 17 16 20 20 C 1.46499 * 126.04177 * 179.69556 * 19 18 17 21 21 C 1.34952 * 107.92298 * 359.72043 * 19 18 17 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99954 * 95.00750 * 12 2 1 27 27 H 1.09004 * 109.46842 * 299.99234 * 15 13 12 28 28 H 1.08989 * 109.47687 * 59.99974 * 15 13 12 29 29 H 1.07998 * 125.89648 * 359.97438 * 17 16 15 30 30 H 1.09001 * 109.47236 * 270.02871 * 20 19 18 31 31 H 1.09006 * 109.46704 * 30.02229 * 20 19 18 32 32 H 1.08996 * 109.47465 * 150.02768 * 20 19 18 33 33 H 1.08007 * 126.12556 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0182 2.3572 14 8 1.8591 1.1587 2.4114 15 6 2.6496 -0.7284 3.5876 16 6 2.6996 0.2399 4.7413 17 6 3.7911 1.0380 5.0991 18 7 3.4541 1.7456 6.1467 19 7 2.1388 1.4123 6.4952 20 6 1.3762 1.9698 7.6150 21 6 1.6985 0.4865 5.6177 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.2490 -1.6317 1.1528 27 1 1.9772 -1.5505 3.8327 28 1 3.6488 -1.1203 3.3982 29 1 4.7463 1.0671 4.5959 30 1 1.5389 1.3610 8.5043 31 1 1.7074 2.9903 7.8077 32 1 0.3151 1.9730 7.3661 33 1 0.7221 0.0248 5.6154 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330392934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:44:21 Heat of formation + Delta-G solvation = 10.190812 kcal Electronic energy + Delta-G solvation = -16305.703703 eV Core-core repulsion = 13560.121398 eV Total energy + Delta-G solvation = -2745.582305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.10289 -40.22308 -36.64376 -34.47766 -34.22360 -32.71347 -30.85136 -28.93578 -27.31245 -26.56905 -23.18459 -21.98224 -21.43017 -20.79452 -18.83884 -17.69357 -17.36962 -16.99033 -16.20196 -15.97073 -15.79920 -15.27724 -14.64139 -14.35059 -14.16690 -13.92299 -13.62736 -13.38415 -13.19729 -12.92277 -12.89557 -12.71814 -12.46833 -12.24102 -12.11325 -11.51238 -11.05653 -10.67443 -10.52077 -10.29901 -9.62811 -9.25193 -8.14375 -6.31904 0.99721 1.46758 1.47813 1.58332 1.73834 1.83327 2.01537 2.41391 2.93447 3.16173 3.68898 4.03897 4.19003 4.34357 4.44713 4.47301 4.59318 4.68769 4.80351 4.86934 4.94257 4.96758 5.14502 5.25393 5.49040 5.66742 5.74071 5.76394 5.98833 6.15353 6.20228 6.76351 6.77850 7.13189 7.37102 7.73970 8.91879 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.057203 B = 0.004664 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.365718 B = 6001.982286 C = 6164.563803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H -0.008 1.008 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.709 5.709 13 C 0.496 3.504 14 O -0.602 6.602 15 C -0.046 4.046 16 C -0.235 4.235 17 C 0.046 3.954 18 N -0.338 5.338 19 N -0.384 5.384 20 C 0.094 3.906 21 C 0.065 3.935 22 H 0.042 0.958 23 H 0.010 0.990 24 H 0.062 0.938 25 H 0.264 0.736 26 H 0.406 0.594 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.190 0.810 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -6.079 16.460 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.010 0.990 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.358 5.358 13 C 0.283 3.717 14 O -0.484 6.484 15 C -0.087 4.087 16 C -0.247 4.247 17 C -0.139 4.139 18 N -0.160 5.160 19 N -0.166 5.166 20 C -0.046 4.046 21 C -0.082 4.082 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.241 0.759 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.207 0.793 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.924 -4.181 17.352 17.873 hybrid contribution -0.053 -0.737 -1.684 1.839 sum 0.872 -4.919 15.668 16.445 Atomic orbital electron populations 1.21873 0.98453 0.99418 0.99284 1.18280 0.91042 0.91745 0.82403 0.99000 1.21594 1.32445 1.13413 0.90831 0.90655 1.25827 0.94964 0.95552 1.02434 1.70068 1.37320 1.24024 1.24482 0.85336 0.79053 0.77975 0.77908 1.19589 1.21472 1.18673 1.46280 1.65621 1.14270 1.09670 1.21583 0.77244 0.87167 0.85675 1.90634 1.52931 1.18822 1.86006 1.19931 1.05034 0.96576 0.87151 1.19741 0.95324 1.07680 1.01921 1.24039 1.00747 0.94578 0.94544 1.77198 0.95353 1.24600 1.18875 1.48746 1.10535 1.32146 1.25179 1.22162 0.95752 1.00519 0.86127 1.22761 1.00456 0.93585 0.91430 0.93899 0.97048 0.91922 0.92685 0.75853 0.85490 0.86077 0.79282 0.88836 0.89565 0.87369 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 14.07 2.56 44.25 0.11 14.18 16 3 H -0.01 -0.50 7.58 -2.39 -0.02 -0.51 16 4 C -0.54 -28.85 8.72 25.60 0.22 -28.62 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.64 5.31 84.65 0.45 1.09 16 7 N -0.92 -53.48 11.33 21.45 0.24 -53.23 16 8 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 12 N -0.71 -28.71 5.07 -446.09 -2.26 -30.97 16 13 C 0.50 19.26 7.79 87.66 0.68 19.94 16 14 O -0.60 -30.08 15.70 -3.04 -0.05 -30.13 16 15 C -0.05 -1.18 6.19 29.10 0.18 -1.00 16 16 C -0.23 -6.69 4.59 -20.14 -0.09 -6.78 16 17 C 0.05 1.40 11.96 85.24 1.02 2.41 16 18 N -0.34 -10.64 12.58 -57.03 -0.72 -11.36 16 19 N -0.38 -9.86 4.01 -369.56 -1.48 -11.35 16 20 C 0.09 1.41 11.47 127.77 1.47 2.88 16 21 C 0.06 1.63 11.40 83.54 0.95 2.58 16 22 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.06 3.52 6.08 -2.38 -0.01 3.51 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.41 13.34 8.54 -92.71 -0.79 12.55 16 27 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.19 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -76.54 290.15 3.74 -72.80 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.32 Total: 19.53 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.66 Total: 0.65 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.22 Total: -106.91 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -76.54 3.74 -72.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330392934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.991 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds