Wall clock time and date at job start Mon Mar 30 2020 17:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 N 1.46497 * 109.46707 * 120.00122 * 2 1 3 5 5 C 1.34455 * 125.79022 * 275.28779 * 4 2 1 6 6 C 1.37831 * 107.42854 * 180.16073 * 5 4 2 7 7 C 1.47747 * 126.37675 * 179.83921 * 6 5 4 8 8 O 1.35242 * 120.00051 * 359.70801 * 7 6 5 9 9 N 1.30145 * 119.99847 * 179.71694 * 7 6 5 10 10 C 1.46499 * 119.99761 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.46992 * 114.99721 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.41150 * 107.24399 * 359.57393 * 6 5 4 20 20 N 1.30513 * 108.06617 * 0.26436 * 19 6 5 21 21 H 1.08999 * 109.46946 * 59.99536 * 1 2 3 22 22 H 1.08994 * 109.47434 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46867 * 299.99981 * 1 2 3 24 24 H 1.08997 * 109.46867 * 240.00018 * 2 1 3 25 25 H 1.09003 * 109.46925 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47576 * 300.00078 * 3 2 1 27 27 H 1.09011 * 109.47260 * 60.00300 * 3 2 1 28 28 H 1.08001 * 126.29026 * 0.02562 * 5 4 2 29 29 H 0.96698 * 114.00272 * 0.02562 * 8 7 6 30 30 H 1.09002 * 109.47391 * 354.99711 * 10 9 7 31 31 H 1.09001 * 109.46813 * 234.99768 * 10 9 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 33 33 H 1.07998 * 125.96620 * 180.27898 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1856 -0.1376 2.4102 6 6 2.6627 -1.1211 3.2497 7 6 2.9951 -0.9663 4.6810 8 8 2.8432 0.2345 5.2843 9 7 3.4341 -1.9854 5.3610 10 6 3.7641 -1.8317 6.7800 11 6 2.8237 -2.6690 7.6080 12 1 2.0571 -3.2572 7.1255 13 6 2.9426 -2.6850 8.9816 14 7 3.8764 -1.9692 9.5691 15 14 1.7774 -3.7235 10.0078 16 1 2.3536 -5.0798 10.1906 17 1 1.5834 -3.0851 11.3346 18 1 0.4688 -3.8310 9.3143 19 6 2.7689 -2.3053 2.4890 20 7 2.3839 -2.0395 1.2706 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 1.9852 0.8893 2.6780 29 1 2.5120 0.9296 4.6994 30 1 3.6645 -0.7843 7.0649 31 1 4.7894 -2.1591 6.9521 32 1 3.9598 -1.9802 10.5355 33 1 3.1090 -3.2640 2.8518 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331177817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:44:54 Heat of formation + Delta-G solvation = 11.838691 kcal Electronic energy + Delta-G solvation = -16154.229934 eV Core-core repulsion = 13408.719086 eV Total energy + Delta-G solvation = -2745.510848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.32024 -39.47636 -36.67052 -35.80531 -34.13839 -31.51462 -31.22057 -28.98199 -28.16468 -25.50803 -23.67414 -22.84847 -21.13413 -20.82841 -19.29410 -18.48027 -17.09817 -16.56042 -16.36744 -16.00187 -15.79958 -15.27086 -14.94541 -14.33728 -14.18234 -13.93683 -13.74649 -13.56763 -13.15948 -13.03262 -12.82660 -12.64345 -12.32210 -12.20140 -12.07354 -11.76357 -11.66829 -10.79653 -10.53406 -10.44766 -10.17481 -9.12140 -8.20826 -6.35558 0.59596 1.20900 1.37609 1.41386 1.45977 1.52683 2.34334 2.50399 3.03069 3.12992 3.33557 3.74480 3.80040 3.95963 4.11398 4.17811 4.36608 4.58939 4.69289 4.78188 4.85409 4.95276 4.97238 5.21668 5.24369 5.27274 5.35757 5.49702 5.69212 6.01065 6.13514 6.59604 6.72108 7.04993 7.22925 7.46079 8.88428 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044989 B = 0.004673 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.220980 B = 5990.494288 C = 6130.630640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 C -0.162 4.162 4 N -0.349 5.349 5 C 0.106 3.894 6 C -0.250 4.250 7 C 0.388 3.612 8 O -0.522 6.522 9 N -0.559 5.559 10 C 0.196 3.804 11 C -0.532 4.532 12 H 0.052 0.948 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.268 1.268 19 C 0.089 3.911 20 N -0.324 5.324 21 H 0.105 0.895 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.227 0.773 29 H 0.407 0.593 30 H -0.011 1.011 31 H 0.002 0.998 32 H 0.268 0.732 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.687 10.293 -21.805 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.220 4.220 4 N -0.128 5.128 5 C -0.047 4.047 6 C -0.264 4.264 7 C 0.161 3.839 8 O -0.319 6.319 9 N -0.293 5.293 10 C 0.068 3.932 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.802 3.198 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.192 1.192 19 C -0.097 4.097 20 N -0.145 5.145 21 H 0.124 0.876 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.099 0.901 28 H 0.243 0.757 29 H 0.262 0.738 30 H 0.007 0.993 31 H 0.019 0.981 32 H 0.076 0.924 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.429 8.862 -22.442 25.246 hybrid contribution -0.210 0.629 1.712 1.836 sum -7.640 9.492 -20.729 24.045 Atomic orbital electron populations 1.22249 0.92359 1.02645 1.04733 1.21785 0.95746 0.93998 0.84140 1.22258 1.02057 0.91973 1.05724 1.49055 1.47876 1.06754 1.09160 1.23189 0.96654 1.00179 0.84698 1.19074 1.19369 0.96375 0.91588 1.21576 0.91065 0.81529 0.89682 1.85130 1.83051 1.20522 1.43197 1.72651 1.20387 1.25380 1.10867 1.19143 0.94956 0.94968 0.84115 1.21402 1.16112 1.27669 0.91871 0.93017 1.26010 0.97665 0.97034 0.98906 1.70097 1.34689 1.41890 1.10516 0.85263 0.78621 0.78507 0.77456 1.19359 1.19809 1.19203 1.23988 0.96562 0.99514 0.89652 1.77170 1.22503 0.94595 1.20212 0.87598 0.93577 0.91404 0.87660 0.92026 0.87390 0.90056 0.75666 0.73811 0.99271 0.98061 0.92365 0.79967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.52 71.98 0.69 -0.89 16 2 C 0.14 1.69 3.91 44.99 0.18 1.87 16 3 C -0.16 -0.94 8.83 71.98 0.64 -0.30 16 4 N -0.35 -7.29 3.50 -325.79 -1.14 -8.43 16 5 C 0.11 2.18 9.98 84.19 0.84 3.02 16 6 C -0.25 -7.96 6.12 -20.15 -0.12 -8.08 16 7 C 0.39 16.22 7.98 87.46 0.70 16.91 16 8 O -0.52 -19.79 12.00 -85.25 -1.02 -20.81 16 9 N -0.56 -29.50 10.29 -459.30 -4.73 -34.22 16 10 C 0.20 12.16 6.09 85.63 0.52 12.68 16 11 C -0.53 -34.11 9.39 25.60 0.24 -33.87 16 12 H 0.05 3.30 7.81 -2.91 -0.02 3.27 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.93 -59.75 13.29 21.45 0.28 -59.47 16 15 Si 0.98 47.22 29.54 68.60 2.03 49.24 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.09 2.94 11.79 85.60 1.01 3.95 16 20 N -0.32 -9.43 12.51 -56.34 -0.70 -10.14 16 21 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 22 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.08 0.29 7.14 -2.38 -0.02 0.27 16 28 H 0.23 2.10 6.52 -2.91 -0.02 2.08 16 29 H 0.41 8.64 7.54 -74.06 -0.56 8.08 16 30 H -0.01 -0.70 6.74 -2.39 -0.02 -0.72 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.18 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -85.81 290.63 0.42 -85.39 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 0.56 Total: 2.57 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.14 Total: -4.13 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -6.29 Total: -112.26 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.02 Total: -20.81 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -85.81 0.42 -85.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331177817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.225 kcal (2) G-P(sol) polarization free energy of solvation -85.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds