Wall clock time and date at job start Mon Mar 30 2020 17:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04040 * 2 1 4 4 C 1.35311 * 107.75028 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.04430 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47278 * 270.00034 * 5 4 3 7 7 O 1.21279 * 120.00004 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00344 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00254 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46984 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46608 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00364 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99837 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99695 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00203 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46929 * 89.99927 * 15 13 11 17 17 H 1.48499 * 109.47192 * 209.99898 * 15 13 11 18 18 H 1.48506 * 109.46966 * 329.99761 * 15 13 11 19 19 C 1.39876 * 107.91749 * 359.97438 * 4 3 2 20 20 N 1.30834 * 108.20073 * 0.27043 * 19 4 3 21 21 H 1.08995 * 109.47266 * 90.00219 * 1 2 3 22 22 H 1.08996 * 109.47009 * 210.00717 * 1 2 3 23 23 H 1.09011 * 109.46832 * 330.00309 * 1 2 3 24 24 H 1.08009 * 126.12562 * 359.96327 * 3 2 1 25 25 H 1.09010 * 109.47174 * 29.99755 * 5 4 3 26 26 H 1.09000 * 109.47328 * 149.99329 * 5 4 3 27 27 H 0.97004 * 119.99985 * 359.97438 * 8 6 5 28 28 H 1.08993 * 109.46929 * 299.99764 * 9 8 6 29 29 H 1.09004 * 109.46721 * 59.99666 * 9 8 6 30 30 H 1.09000 * 109.47180 * 299.99625 * 10 9 8 31 31 H 1.08995 * 109.46768 * 60.00299 * 10 9 8 32 32 H 0.97002 * 119.99513 * 179.97438 * 14 13 11 33 33 H 1.08002 * 125.89548 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5452 -0.0013 6 6 5.1754 1.8378 -1.4223 7 8 4.5350 1.3778 -2.3438 8 7 6.2521 2.6100 -1.6693 9 6 6.6485 2.8940 -3.0508 10 6 7.8915 3.7862 -3.0515 11 6 8.2988 4.0789 -4.4726 12 1 7.7280 3.6699 -5.2931 13 6 9.4003 4.8689 -4.7253 14 7 10.0950 5.3674 -3.7260 15 14 9.9056 5.2311 -6.4867 16 1 9.2235 6.4648 -6.9536 17 1 11.3766 5.4247 -6.5498 18 1 9.5185 4.0918 -7.3570 19 6 3.5346 -0.7322 -0.0003 20 7 2.2891 -1.1328 -0.0055 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5138 24 1 1.9282 2.1194 -0.0006 25 1 4.5445 2.4803 0.5125 26 1 5.5823 1.0341 0.5123 27 1 6.7646 2.9776 -0.9324 28 1 6.8718 1.9589 -3.5642 29 1 5.8343 3.4053 -3.5645 30 1 7.6678 4.7214 -2.5381 31 1 8.7057 3.2753 -2.5376 32 1 10.8701 5.9229 -3.9038 33 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342636946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:46 Heat of formation + Delta-G solvation = 27.986269 kcal Electronic energy + Delta-G solvation = -15770.811356 eV Core-core repulsion = 13026.000719 eV Total energy + Delta-G solvation = -2744.810636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21599 -38.93807 -34.80761 -33.63328 -32.80748 -31.75843 -29.70601 -28.20890 -25.96356 -24.38085 -21.20506 -21.11997 -20.57921 -19.66697 -16.90953 -16.71719 -16.19274 -15.36665 -15.08635 -14.98581 -14.44766 -14.38367 -13.61759 -13.24682 -13.16552 -12.81926 -12.59563 -12.43431 -12.23824 -11.69742 -11.17766 -11.01286 -10.63625 -10.59062 -10.28714 -9.74277 -9.43962 -9.40941 -9.17237 -8.49688 -8.34368 -8.29606 -6.08227 -4.10783 1.88128 2.48674 2.77778 3.14559 3.30233 3.36327 3.40747 3.94745 4.41154 4.44199 4.78811 4.94626 5.03390 5.13066 5.19004 5.28826 5.32629 5.47285 5.69288 5.78245 6.11276 6.39450 6.40129 6.63890 6.78438 6.96811 7.01331 7.54695 7.64606 7.68001 7.90656 8.12268 8.30861 8.78863 8.95629 9.53964 11.03379 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.064497 B = 0.003669 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.021856 B = 7630.374371 C = 7783.012510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.066 3.934 4 C -0.213 4.213 5 C -0.063 4.063 6 C 0.502 3.498 7 O -0.545 6.545 8 N -0.726 5.726 9 C 0.122 3.878 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.063 3.937 20 N -0.303 5.303 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.171 0.829 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.397 0.603 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.616 -6.883 11.569 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.080 4.080 4 C -0.225 4.225 5 C -0.104 4.104 6 C 0.288 3.712 7 O -0.423 6.423 8 N -0.377 5.377 9 C 0.000 4.000 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.123 4.123 20 N -0.124 5.124 21 H 0.091 0.909 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.188 0.812 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.230 0.770 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -15.888 -8.113 10.914 20.913 hybrid contribution 1.166 1.258 -0.673 1.842 sum -14.722 -6.856 10.241 19.199 Atomic orbital electron populations 1.21805 0.74476 1.04149 1.03322 1.48349 1.06461 1.03909 1.57520 1.22228 0.90855 0.93233 1.01702 1.19465 0.93556 0.93706 1.15779 1.19933 0.95772 0.99824 0.94855 1.20666 0.80631 0.78685 0.91253 1.90673 1.53556 1.51566 1.46482 1.46350 1.29489 1.51272 1.10567 1.21673 0.98745 0.99672 0.79929 1.19320 0.90890 0.94212 0.98061 1.21073 1.11966 1.31009 0.91956 0.92300 1.24998 0.96263 0.95680 0.97368 1.69958 1.18577 1.34042 1.30780 0.86518 0.77615 0.78778 0.84686 1.20580 1.21167 1.19729 1.23722 0.95128 0.94493 0.98943 1.77296 1.01682 1.08275 1.25135 0.90880 0.89502 0.89621 0.81173 0.88661 0.88319 0.76970 0.92751 0.92821 0.95981 0.95931 0.92867 0.80214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.59 4.01 -68.16 -0.27 -4.86 16 3 C 0.07 0.78 11.40 -17.23 -0.20 0.59 16 4 C -0.21 -2.78 4.59 -105.06 -0.48 -3.26 16 5 C -0.06 -0.73 6.18 -29.04 -0.18 -0.91 16 6 C 0.50 8.37 7.82 -10.99 -0.09 8.29 16 7 O -0.55 -11.52 16.03 5.56 0.09 -11.43 16 8 N -0.73 -12.45 5.56 -60.29 -0.33 -12.79 16 9 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.06 0.86 11.96 -17.36 -0.21 0.65 16 20 N -0.30 -4.35 12.58 30.63 0.39 -3.97 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 25 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.40 5.73 8.47 -40.82 -0.35 5.39 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -35.24 294.95 -5.55 -40.79 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.54 Total: 0.54 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.04 Total: -3.75 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.51 Total: -47.03 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.24 -5.55 -40.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342636946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.776 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds