Wall clock time and date at job start Mon Mar 30 2020 17:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47058 * 2 1 4 4 C 1.35398 * 126.44620 * 265.02678 * 3 2 1 5 5 C 1.35558 * 107.16602 * 179.97438 * 4 3 2 6 6 N 1.33107 * 108.34595 * 0.26380 * 5 4 3 7 7 C 1.31614 * 109.09587 * 359.56681 * 6 5 4 8 8 C 1.47405 * 125.86240 * 180.17060 * 7 6 5 9 9 O 1.21612 * 119.99864 * 175.32492 * 8 7 6 10 10 N 1.34772 * 120.00373 * 355.32006 * 8 7 6 11 11 C 1.46502 * 119.99655 * 2.51998 * 10 8 7 12 12 C 1.46496 * 120.00455 * 182.51776 * 10 8 7 13 13 C 1.50697 * 109.47181 * 90.00128 * 12 10 8 14 14 H 1.07998 * 120.00085 * 359.97438 * 13 12 10 15 15 C 1.37881 * 120.00063 * 180.02562 * 13 12 10 16 16 N 1.31520 * 119.99775 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47197 * 60.00211 * 17 15 13 19 19 H 1.48506 * 109.46968 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47101 * 299.99676 * 17 15 13 21 21 H 1.08999 * 109.46766 * 299.99351 * 1 2 3 22 22 H 1.08994 * 109.46918 * 59.99320 * 1 2 3 23 23 H 1.08999 * 109.46571 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47232 * 240.00418 * 2 1 3 25 25 H 1.08994 * 109.47651 * 120.00550 * 2 1 3 26 26 H 1.08009 * 126.41506 * 359.97438 * 4 3 2 27 27 H 1.07995 * 125.82872 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47287 * 83.85486 * 11 10 8 29 29 H 1.09001 * 109.46998 * 203.85627 * 11 10 8 30 30 H 1.09000 * 109.47032 * 323.85279 * 11 10 8 31 31 H 1.09003 * 109.47412 * 210.00266 * 12 10 8 32 32 H 1.09000 * 109.46810 * 329.99637 * 12 10 8 33 33 H 0.96997 * 119.99801 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3755 2.1081 -1.0851 5 6 2.7649 3.3277 -0.6392 6 7 2.6540 3.3438 0.6871 7 6 2.1986 2.1784 1.0954 8 6 1.9342 1.7966 2.4944 9 8 1.4326 0.7176 2.7457 10 7 2.2485 2.6430 3.4949 11 6 2.8018 3.9647 3.1896 12 6 2.0370 2.2415 4.8878 13 6 3.2780 1.5642 5.4094 14 1 4.1382 1.4443 4.7674 15 6 3.3150 1.0965 6.7059 16 7 2.2674 1.2420 7.4876 17 14 4.8531 0.2562 7.3522 18 1 5.9996 1.1970 7.2774 19 1 4.6386 -0.1507 8.7642 20 1 5.1438 -0.9451 6.5291 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.3541 1.7781 -2.1133 27 1 3.1108 4.1449 -1.2546 28 1 1.9887 4.6582 2.9747 29 1 3.3714 4.3267 4.0454 30 1 3.4568 3.8927 2.3213 31 1 1.8233 3.1234 5.4918 32 1 1.1955 1.5509 4.9430 33 1 2.2935 0.9133 8.3998 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346224122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:38:54 Heat of formation + Delta-G solvation = 15.619923 kcal Electronic energy + Delta-G solvation = -17013.672427 eV Core-core repulsion = 14268.325545 eV Total energy + Delta-G solvation = -2745.346881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.25031 -40.22795 -36.96621 -35.75357 -34.69787 -31.55772 -30.82240 -29.41084 -27.44058 -25.69709 -24.72862 -23.01019 -22.14455 -20.13683 -18.72813 -18.23824 -17.40754 -16.97171 -16.82845 -16.21621 -15.65557 -15.41452 -14.79428 -14.65517 -14.39474 -14.21176 -13.76355 -13.62460 -13.46597 -13.17289 -12.98655 -12.87994 -12.57838 -12.27546 -12.16842 -11.77245 -11.13412 -10.80441 -10.69694 -10.63490 -9.63067 -9.32673 -8.24436 -6.40252 0.44726 1.36150 1.40212 1.47599 1.54765 1.76243 2.31064 2.46373 2.49420 3.04531 3.36294 3.76290 3.86165 4.06318 4.34512 4.42884 4.52173 4.55745 4.71221 4.78384 4.82433 4.93867 5.06212 5.15894 5.18021 5.36201 5.52396 5.72094 5.85190 5.99739 6.01568 6.55825 6.67468 6.89860 7.19900 7.34638 8.82709 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.006846 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.534896 B = 4088.753060 C = 4405.478832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 N -0.414 5.414 4 C -0.009 4.009 5 C -0.051 4.051 6 N -0.458 5.458 7 C 0.109 3.891 8 C 0.579 3.421 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.084 3.916 12 C 0.262 3.738 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.970 3.030 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.276 1.276 21 H 0.028 0.972 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.075 0.925 26 H 0.231 0.769 27 H 0.209 0.791 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.007 0.993 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 1.384 -19.351 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.094 5.094 4 C -0.148 4.148 5 C -0.203 4.203 6 N -0.180 5.180 7 C -0.148 4.148 8 C 0.366 3.634 9 O -0.462 6.462 10 N -0.316 5.316 11 C -0.059 4.059 12 C 0.141 3.859 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.794 3.206 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.201 1.201 21 H 0.047 0.953 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.155 0.845 25 H 0.093 0.907 26 H 0.248 0.752 27 H 0.226 0.774 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.045 0.955 32 H 0.025 0.975 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.279 1.272 -18.401 18.447 hybrid contribution 0.251 -0.983 0.429 1.101 sum 0.531 0.290 -17.972 17.983 Atomic orbital electron populations 1.21993 0.93202 1.04156 1.01807 1.22238 0.96724 0.78128 1.05676 1.45518 1.44501 1.13403 1.06027 1.23715 1.04056 0.93008 0.94020 1.23206 1.07597 0.99189 0.90357 1.70311 1.15367 1.18427 1.13940 1.22314 1.12734 0.89941 0.89792 1.17032 0.79197 0.83928 0.83220 1.90707 1.47196 1.23741 1.84571 1.47879 1.60398 1.16674 1.06641 1.22183 0.99368 0.81735 1.02583 1.18888 0.96122 0.94892 0.75982 1.21619 1.00098 1.39155 0.97782 0.93114 1.25860 1.00071 0.96222 0.96694 1.70043 1.31161 1.47178 1.08153 0.85434 0.79039 0.78799 0.77343 1.18677 1.19896 1.20133 0.95284 0.90371 0.88644 0.84528 0.90678 0.75215 0.77409 0.92351 0.91918 0.87684 0.95465 0.97523 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 10.18 71.98 0.73 -2.80 16 2 C 0.09 2.25 6.14 86.38 0.53 2.79 16 3 N -0.41 -11.71 2.76 -516.43 -1.42 -13.14 16 4 C -0.01 -0.18 11.53 83.52 0.96 0.78 16 5 C -0.05 -1.17 11.85 83.88 0.99 -0.17 16 6 N -0.46 -15.17 7.68 -189.53 -1.45 -16.63 16 7 C 0.11 4.11 7.51 136.28 1.02 5.13 16 8 C 0.58 27.57 7.66 86.66 0.66 28.24 16 9 O -0.58 -30.74 13.85 -4.07 -0.06 -30.80 16 10 N -0.59 -28.68 2.86 -855.07 -2.44 -31.12 16 11 C 0.08 3.30 9.58 127.77 1.22 4.53 16 12 C 0.26 15.01 5.15 85.63 0.44 15.46 16 13 C -0.55 -32.96 9.39 25.60 0.24 -32.72 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.64 5.46 84.65 0.46 1.11 16 16 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 17 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H 0.03 0.91 7.61 -2.39 -0.02 0.89 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.14 1.94 8.13 -2.39 -0.02 1.92 16 25 H 0.07 2.39 6.76 -2.39 -0.02 2.38 16 26 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 27 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.45 8.03 -2.39 -0.02 2.43 16 30 H 0.11 3.94 5.36 -2.39 -0.01 3.93 16 31 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 32 H 0.01 0.43 7.39 -2.39 -0.02 0.41 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -76.98 283.74 5.31 -71.67 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.10 Total: 6.54 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 7.27 Total: 22.33 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.04 Total: -117.46 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.06 Total: -30.80 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.98 5.31 -71.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346224122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.291 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds