Wall clock time and date at job start Mon Mar 30 2020 17:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47282 * 2 1 4 4 C 1.53007 * 109.47023 * 119.99699 * 2 1 3 5 5 C 1.50702 * 109.46836 * 185.00229 * 4 2 1 6 6 C 1.38259 * 119.98806 * 89.99771 * 5 4 2 7 7 C 1.38229 * 120.04954 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.02752 * 0.29826 * 7 6 5 9 9 C 1.38444 * 119.96913 * 359.47083 * 8 7 6 10 10 F 1.35101 * 120.02634 * 180.25128 * 9 8 7 11 11 C 1.38178 * 119.98059 * 270.01728 * 5 4 2 12 12 N 1.46497 * 109.46983 * 239.99210 * 2 1 3 13 13 C 1.46499 * 120.00524 * 299.99911 * 12 2 1 14 14 C 1.36948 * 119.99695 * 120.00241 * 12 2 1 15 15 H 1.07998 * 119.99536 * 23.52316 * 14 12 2 16 16 C 1.38807 * 119.99658 * 203.52531 * 14 12 2 17 17 N 1.31619 * 120.00470 * 11.45016 * 16 14 12 18 18 Si 1.86808 * 119.99517 * 191.44901 * 16 14 12 19 19 H 1.48498 * 109.47126 * 60.00035 * 18 16 14 20 20 H 1.48504 * 109.46741 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47100 * 299.99805 * 18 16 14 22 22 H 1.09000 * 109.47504 * 60.00465 * 1 2 3 23 23 H 1.09004 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47153 * 300.00127 * 1 2 3 25 25 H 1.08996 * 109.46951 * 65.00189 * 4 2 1 26 26 H 1.09001 * 109.46786 * 305.00089 * 4 2 1 27 27 H 1.07996 * 119.97879 * 0.02562 * 6 5 4 28 28 H 1.07997 * 119.98833 * 180.02562 * 7 6 5 29 29 H 1.07990 * 120.01675 * 179.72303 * 8 7 6 30 30 H 1.07993 * 120.01828 * 359.97438 * 11 5 4 31 31 H 1.09002 * 109.46609 * 94.39052 * 13 12 2 32 32 H 1.09000 * 109.47558 * 214.39288 * 13 12 2 33 33 H 1.09000 * 109.46943 * 334.39963 * 13 12 2 34 34 H 0.96997 * 119.99683 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1322 0.4498 1.9684 7 6 5.5096 0.5484 2.0279 8 6 6.2986 -0.4141 1.4265 9 6 5.7086 -1.4831 0.7739 10 9 6.4786 -2.4272 0.1901 11 6 4.3284 -1.5811 0.7153 12 7 2.0183 -0.6908 -1.1961 13 6 1.6644 -2.0934 -1.4278 14 6 2.8056 -0.0253 -2.0976 15 1 3.3754 0.8368 -1.7837 16 6 2.8712 -0.4589 -3.4145 17 7 2.0170 -1.3583 -3.8547 18 14 4.1720 0.2343 -4.5623 19 1 5.5213 -0.0639 -4.0188 20 1 4.0306 -0.3874 -5.9035 21 1 3.9982 1.7046 -4.6769 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7516 -1.7714 1.2057 26 1 1.6053 -0.2616 2.1370 27 1 3.5166 1.2045 2.4352 28 1 5.9697 1.3801 2.5406 29 1 7.3747 -0.3346 1.4692 30 1 3.8672 -2.4126 0.2034 31 1 0.7813 -2.1447 -2.0646 32 1 2.4953 -2.6017 -1.9170 33 1 1.4533 -2.5771 -0.4741 34 1 2.0632 -1.6615 -4.7749 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459750453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:12 Heat of formation + Delta-G solvation = -6.342656 kcal Electronic energy + Delta-G solvation = -17212.188615 eV Core-core repulsion = 14445.969403 eV Total energy + Delta-G solvation = -2766.219212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.41354 -38.86569 -36.33684 -32.93108 -30.94912 -30.11621 -29.08677 -26.01654 -25.95244 -23.05001 -22.26838 -21.28690 -18.96250 -16.83882 -16.77276 -15.87961 -15.73695 -15.11030 -14.92485 -14.01439 -13.76370 -13.36023 -13.30630 -12.86920 -12.43718 -12.19841 -11.81572 -11.59230 -11.42931 -11.16064 -11.06300 -10.75569 -10.67638 -10.38004 -10.23182 -10.14569 -9.75385 -9.72249 -8.51286 -8.39482 -8.19067 -6.66769 -5.65381 -3.10695 1.61636 1.71021 3.43081 3.48209 3.50467 4.04056 4.55122 4.71056 5.11011 5.17443 5.42999 5.46788 5.50605 5.62837 5.81671 5.85880 6.05282 6.06762 6.25028 6.34579 6.40540 6.49683 6.50948 6.60720 6.69622 6.79697 6.89926 7.04171 7.10910 7.37078 7.43168 7.79641 7.87477 8.47683 9.31480 9.94569 10.43652 11.39451 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.011095 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.333150 B = 2522.996735 C = 3359.134525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.063 0.937 4 C -0.101 4.101 5 C -0.023 4.023 6 C -0.137 4.137 7 C -0.098 4.098 8 C -0.171 4.171 9 C 0.095 3.905 10 F -0.146 7.146 11 C -0.118 4.118 12 N -0.590 5.590 13 C 0.163 3.837 14 C -0.244 4.244 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.909 5.909 18 Si 0.898 3.102 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.284 1.284 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.028 0.972 32 H 0.040 0.960 33 H -0.003 1.003 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 1.521 11.951 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.081 0.919 4 C -0.141 4.141 5 C -0.023 4.023 6 C -0.155 4.155 7 C -0.116 4.116 8 C -0.190 4.190 9 C 0.076 3.924 10 F -0.125 7.125 11 C -0.137 4.137 12 N -0.312 5.312 13 C 0.019 3.981 14 C -0.374 4.374 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.555 5.555 18 Si 0.728 3.272 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.210 1.210 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.015 0.985 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.728 1.393 11.727 12.121 hybrid contribution 0.880 0.170 -1.036 1.370 sum 3.608 1.563 10.691 11.392 Atomic orbital electron populations 1.22272 0.98278 1.01004 1.00201 1.20318 0.91529 0.95290 0.86127 0.91870 1.21298 0.90322 1.02521 0.99927 1.19632 0.96130 0.92766 0.93782 1.21013 0.94583 0.98418 1.01468 1.20806 0.93625 0.98013 0.99197 1.20948 1.00315 0.95425 1.02297 1.17744 0.89081 0.88266 0.97283 1.91460 1.75279 1.63334 1.82425 1.21015 0.91079 1.01511 1.00052 1.43877 1.57974 1.07843 1.21493 1.20749 0.99828 0.83733 0.93814 1.19097 1.18131 1.11424 0.88766 0.91833 1.24967 0.98385 0.99580 0.96589 1.70041 1.36038 1.33897 1.15490 0.86430 0.81951 0.78533 0.80261 1.21126 1.21702 1.21033 0.92588 0.93417 0.94285 0.91119 0.91629 0.86068 0.85893 0.85753 0.84920 0.95337 0.94135 0.98500 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.19 37.16 0.34 -2.48 16 2 C 0.18 3.45 2.70 -67.93 -0.18 3.27 16 3 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 4 C -0.10 -1.67 4.78 -27.88 -0.13 -1.80 16 5 C -0.02 -0.39 4.95 -104.64 -0.52 -0.91 16 6 C -0.14 -2.05 9.70 -39.58 -0.38 -2.43 16 7 C -0.10 -1.39 10.04 -39.59 -0.40 -1.79 16 8 C -0.17 -2.67 10.03 -39.51 -0.40 -3.06 16 9 C 0.10 1.74 7.30 -39.42 -0.29 1.45 16 10 F -0.15 -2.77 17.27 2.25 0.04 -2.73 16 11 C -0.12 -2.22 9.29 -39.51 -0.37 -2.58 16 12 N -0.59 -14.20 2.19 -173.48 -0.38 -14.58 16 13 C 0.16 3.93 7.39 59.85 0.44 4.37 16 14 C -0.24 -6.65 9.58 -15.06 -0.14 -6.80 16 15 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 16 C 0.00 0.08 5.13 -17.43 -0.09 -0.01 16 17 N -0.91 -26.63 10.66 55.49 0.59 -26.04 16 18 Si 0.90 22.48 29.57 -169.99 -5.03 17.45 16 19 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 26 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.13 2.65 7.43 -52.49 -0.39 2.26 16 31 H 0.03 0.75 7.38 -51.93 -0.38 0.37 16 32 H 0.04 1.07 7.28 -51.93 -0.38 0.69 16 33 H 0.00 -0.07 6.35 -51.93 -0.33 -0.40 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 286.18 15.07 4.31 4.31 Total: -1.00 -29.55 286.18 -7.28 -36.83 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.70 Total: -2.46 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.12 Total: -12.78 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.21 Total: -40.62 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.55 -7.28 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459750453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.489 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds