Wall clock time and date at job start Mon Mar 30 2020 17:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47282 * 2 1 4 4 C 1.53007 * 109.47023 * 119.99699 * 2 1 3 5 5 C 1.50702 * 109.46836 * 185.00229 * 4 2 1 6 6 C 1.38259 * 119.98806 * 89.99771 * 5 4 2 7 7 C 1.38229 * 120.04954 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.02752 * 0.29826 * 7 6 5 9 9 C 1.38444 * 119.96913 * 359.47083 * 8 7 6 10 10 F 1.35101 * 120.02634 * 180.25128 * 9 8 7 11 11 C 1.38178 * 119.98059 * 270.01728 * 5 4 2 12 12 N 1.46497 * 109.46983 * 239.99210 * 2 1 3 13 13 C 1.46499 * 120.00524 * 299.99911 * 12 2 1 14 14 C 1.36948 * 119.99695 * 120.00241 * 12 2 1 15 15 H 1.07998 * 119.99536 * 23.52316 * 14 12 2 16 16 C 1.38807 * 119.99658 * 203.52531 * 14 12 2 17 17 N 1.31619 * 120.00470 * 11.45016 * 16 14 12 18 18 Si 1.86808 * 119.99517 * 191.44901 * 16 14 12 19 19 H 1.48498 * 109.47126 * 60.00035 * 18 16 14 20 20 H 1.48504 * 109.46741 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47100 * 299.99805 * 18 16 14 22 22 H 1.09000 * 109.47504 * 60.00465 * 1 2 3 23 23 H 1.09004 * 109.47210 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47153 * 300.00127 * 1 2 3 25 25 H 1.08996 * 109.46951 * 65.00189 * 4 2 1 26 26 H 1.09001 * 109.46786 * 305.00089 * 4 2 1 27 27 H 1.07996 * 119.97879 * 0.02562 * 6 5 4 28 28 H 1.07997 * 119.98833 * 180.02562 * 7 6 5 29 29 H 1.07990 * 120.01675 * 179.72303 * 8 7 6 30 30 H 1.07993 * 120.01828 * 359.97438 * 11 5 4 31 31 H 1.09002 * 109.46609 * 94.39052 * 13 12 2 32 32 H 1.09000 * 109.47558 * 214.39288 * 13 12 2 33 33 H 1.09000 * 109.46943 * 334.39963 * 13 12 2 34 34 H 0.96997 * 119.99683 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.1322 0.4498 1.9684 7 6 5.5096 0.5484 2.0279 8 6 6.2986 -0.4141 1.4265 9 6 5.7086 -1.4831 0.7739 10 9 6.4786 -2.4272 0.1901 11 6 4.3284 -1.5811 0.7153 12 7 2.0183 -0.6908 -1.1961 13 6 1.6644 -2.0934 -1.4278 14 6 2.8056 -0.0253 -2.0976 15 1 3.3754 0.8368 -1.7837 16 6 2.8712 -0.4589 -3.4145 17 7 2.0170 -1.3583 -3.8547 18 14 4.1720 0.2343 -4.5623 19 1 5.5213 -0.0639 -4.0188 20 1 4.0306 -0.3874 -5.9035 21 1 3.9982 1.7046 -4.6769 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7516 -1.7714 1.2057 26 1 1.6053 -0.2616 2.1370 27 1 3.5166 1.2045 2.4352 28 1 5.9697 1.3801 2.5406 29 1 7.3747 -0.3346 1.4692 30 1 3.8672 -2.4126 0.2034 31 1 0.7813 -2.1447 -2.0646 32 1 2.4953 -2.6017 -1.9170 33 1 1.4533 -2.5771 -0.4741 34 1 2.0632 -1.6615 -4.7749 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459750453.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:11 Heat of formation + Delta-G solvation = -21.482154 kcal Electronic energy + Delta-G solvation = -17212.845113 eV Core-core repulsion = 14445.969403 eV Total energy + Delta-G solvation = -2766.875710 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.82490 -40.16949 -38.00039 -34.71904 -32.50214 -31.45861 -30.76211 -27.99544 -27.33378 -24.94750 -23.52775 -22.64075 -20.59466 -18.81159 -18.11481 -17.32044 -16.97394 -16.81380 -16.52761 -15.83130 -15.27065 -14.85445 -14.80650 -14.32398 -14.09047 -13.85859 -13.23571 -13.06898 -12.93194 -12.76486 -12.66020 -12.46742 -12.35780 -12.26259 -12.10231 -11.67974 -11.58987 -11.36275 -10.60678 -9.69678 -9.48933 -8.66951 -7.77701 -5.22983 0.34611 0.46113 1.41424 1.44838 1.49547 2.51275 2.78422 3.36299 3.42811 3.71034 3.88431 4.03285 4.23182 4.35264 4.45642 4.58337 4.61474 4.73910 4.80954 4.85179 5.04139 5.09799 5.18035 5.24049 5.30311 5.33668 5.45445 5.50620 5.56687 5.69286 5.77401 5.81749 6.13542 6.39430 7.21861 7.96476 8.39075 9.24951 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.011095 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.333150 B = 2522.996735 C = 3359.134525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.169 3.831 3 H 0.060 0.940 4 C -0.090 4.090 5 C -0.040 4.040 6 C -0.131 4.131 7 C -0.089 4.089 8 C -0.170 4.170 9 C 0.063 3.937 10 F -0.160 7.160 11 C -0.143 4.143 12 N -0.601 5.601 13 C 0.184 3.816 14 C -0.238 4.238 15 H 0.062 0.938 16 C -0.054 4.054 17 N -0.939 5.939 18 Si 0.951 3.049 19 H -0.288 1.288 20 H -0.296 1.296 21 H -0.273 1.273 22 H 0.029 0.971 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.106 0.894 27 H 0.155 0.845 28 H 0.165 0.835 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.000 1.000 32 H 0.006 0.994 33 H 0.028 0.972 34 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 3.637 14.392 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.063 3.937 3 H 0.078 0.922 4 C -0.129 4.129 5 C -0.040 4.040 6 C -0.149 4.149 7 C -0.107 4.107 8 C -0.188 4.188 9 C 0.044 3.956 10 F -0.139 7.139 11 C -0.162 4.162 12 N -0.323 5.323 13 C 0.039 3.961 14 C -0.369 4.369 15 H 0.080 0.920 16 C -0.248 4.248 17 N -0.587 5.587 18 Si 0.781 3.219 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.199 1.199 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.124 0.876 27 H 0.173 0.827 28 H 0.183 0.817 29 H 0.165 0.835 30 H 0.124 0.876 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.046 0.954 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.062 3.531 14.209 14.958 hybrid contribution 0.798 -0.438 -1.662 1.895 sum 3.860 3.093 12.547 13.487 Atomic orbital electron populations 1.22149 0.96666 1.01065 1.00976 1.20577 0.92695 0.95048 0.85413 0.92208 1.21175 0.90142 1.02012 0.99576 1.19812 0.96362 0.93310 0.94493 1.21436 0.95508 0.97844 1.00115 1.21315 0.93336 0.98219 0.97847 1.21316 1.01849 0.94494 1.01182 1.18122 0.89096 0.89429 0.98951 1.91415 1.75497 1.64090 1.82935 1.20990 0.91831 1.01932 1.01449 1.44031 1.58039 1.07854 1.22402 1.20383 0.97044 0.84240 0.94396 1.19330 1.17678 1.10704 0.89163 0.92011 1.25604 1.00375 1.00668 0.98169 1.70195 1.37721 1.35573 1.15226 0.85567 0.79624 0.78363 0.78346 1.21527 1.22232 1.19907 0.95143 0.93735 0.90101 0.91795 0.87613 0.82728 0.81723 0.83499 0.87606 0.98197 0.97568 0.95358 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.19 71.98 0.66 -4.33 16 2 C 0.17 6.31 2.70 44.99 0.12 6.44 16 3 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 4 C -0.09 -2.72 4.78 29.85 0.14 -2.58 16 5 C -0.04 -1.27 4.95 -19.87 -0.10 -1.37 16 6 C -0.13 -3.39 9.70 22.27 0.22 -3.17 16 7 C -0.09 -2.14 10.04 22.26 0.22 -1.92 16 8 C -0.17 -4.88 10.03 22.31 0.22 -4.65 16 9 C 0.06 2.29 7.30 22.38 0.16 2.45 16 10 F -0.16 -6.25 17.27 44.97 0.78 -5.48 16 11 C -0.14 -5.41 9.29 22.31 0.21 -5.20 16 12 N -0.60 -29.01 2.19 -702.78 -1.54 -30.55 16 13 C 0.18 9.12 7.39 127.77 0.94 10.07 16 14 C -0.24 -13.05 9.58 84.03 0.81 -12.24 16 15 H 0.06 3.36 7.82 -2.91 -0.02 3.34 16 16 C -0.05 -3.08 5.13 84.86 0.43 -2.65 16 17 N -0.94 -56.87 10.66 21.65 0.23 -56.64 16 18 Si 0.95 46.98 29.57 68.60 2.03 49.01 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 20 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 21 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 1.50 7.67 -2.39 -0.02 1.48 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 2.01 6.43 -2.39 -0.02 2.00 16 26 H 0.11 2.36 8.09 -2.39 -0.02 2.34 16 27 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 28 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 29 H 0.15 3.46 8.06 -2.92 -0.02 3.44 16 30 H 0.11 4.45 7.43 -2.91 -0.02 4.43 16 31 H 0.00 -0.01 7.38 -2.39 -0.02 -0.03 16 32 H 0.01 0.31 7.28 -2.39 -0.02 0.29 16 33 H 0.03 1.19 6.35 -2.39 -0.02 1.17 16 34 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -66.08 286.18 6.62 -59.47 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.07 Total: 3.35 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 4.05 Total: -19.16 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.31 Total: -87.19 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.78 Total: -5.48 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -66.08 6.62 -59.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459750453.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.985 kcal (2) G-P(sol) polarization free energy of solvation -66.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds