Wall clock time and date at job start Mon Mar 30 2020 17:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47401 * 2 1 4 4 C 1.34946 * 126.03799 * 124.97203 * 3 2 1 5 5 C 1.35316 * 107.74228 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03382 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47006 * 269.96842 * 6 5 4 8 8 O 1.21293 * 120.00288 * 0.02562 * 7 6 5 9 9 N 1.34784 * 120.00235 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99527 * 0.02562 * 9 7 6 11 11 C 1.37093 * 120.00006 * 180.02562 * 9 7 6 12 12 H 1.07997 * 120.00782 * 22.40608 * 11 9 7 13 13 C 1.38956 * 119.99632 * 202.40700 * 11 9 7 14 14 N 1.31408 * 120.00106 * 11.59172 * 13 11 9 15 15 Si 1.86793 * 119.99862 * 191.59403 * 13 11 9 16 16 H 1.48496 * 109.47487 * 59.99802 * 15 13 11 17 17 H 1.48507 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47169 * 299.99803 * 15 13 11 19 19 C 1.39868 * 107.92352 * 0.02562 * 5 4 3 20 20 N 1.30839 * 108.19958 * 359.97438 * 19 5 4 21 21 H 1.08998 * 109.47263 * 60.00367 * 1 2 3 22 22 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47285 * 300.00078 * 1 2 3 24 24 H 1.08999 * 109.47285 * 239.99922 * 2 1 3 25 25 H 1.08999 * 109.47032 * 120.00133 * 2 1 3 26 26 H 1.08000 * 126.12967 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47551 * 29.96921 * 6 5 4 28 28 H 1.09004 * 109.46885 * 149.97774 * 6 5 4 29 29 H 1.09005 * 109.46764 * 92.16196 * 10 9 7 30 30 H 1.08998 * 109.46784 * 212.15878 * 10 9 7 31 31 H 1.09001 * 109.47446 * 332.16148 * 10 9 7 32 32 H 0.97004 * 120.00738 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.89572 * 180.26498 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9212 0.8942 5 6 3.0719 3.2135 0.5458 6 6 3.9555 4.1996 1.2654 7 6 3.1525 4.9176 2.3193 8 8 1.9784 4.6542 2.4715 9 7 3.7391 5.8526 3.0929 10 6 5.1571 6.1712 2.9088 11 6 3.0087 6.5053 4.0520 12 1 2.1078 6.0565 4.4435 13 6 3.4275 7.7447 4.5205 14 7 4.3830 8.3949 3.8951 15 14 2.6324 8.4864 6.0393 16 1 2.8338 7.5785 7.1970 17 1 3.2536 9.8037 6.3300 18 1 1.1782 8.6666 5.7988 19 6 2.3129 3.4722 -0.6002 20 7 1.6811 2.3745 -0.9284 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 3.3183 1.4128 1.7364 27 1 4.7827 3.6694 1.7374 28 1 4.3481 4.9239 0.5517 29 1 5.2552 7.0000 2.2077 30 1 5.5937 6.4524 3.8671 31 1 5.6775 5.2983 2.5146 32 1 4.6752 9.2602 4.2219 33 1 2.2613 4.4141 -1.1262 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548360377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:40:31 Heat of formation + Delta-G solvation = 49.837442 kcal Electronic energy + Delta-G solvation = -16528.435583 eV Core-core repulsion = 13784.572485 eV Total energy + Delta-G solvation = -2743.863098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.83107 -38.18410 -34.70892 -34.24078 -31.76884 -31.01417 -29.88322 -26.93603 -25.83157 -24.08770 -23.47203 -20.46100 -20.18461 -18.55356 -16.75938 -16.59508 -15.89826 -15.20491 -14.52937 -14.27108 -14.15862 -13.87308 -13.65629 -12.80622 -12.68303 -12.39216 -12.09621 -11.86883 -11.76719 -11.38824 -11.34423 -11.13397 -10.94101 -10.79590 -10.34935 -10.25896 -10.02614 -9.02525 -8.93604 -8.36994 -7.82860 -7.57144 -6.22051 -3.78215 2.26733 2.80455 3.23755 3.24396 3.28731 3.34005 4.04204 4.23129 4.57572 4.94103 5.09121 5.12830 5.16298 5.22615 5.35359 5.50067 5.71602 5.75878 5.86560 6.05087 6.11365 6.21615 6.27832 6.46585 6.63903 6.97087 7.06131 7.31423 7.37654 7.64433 8.07736 8.24065 8.60348 9.30549 9.54687 10.12881 10.81641 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044317 B = 0.005373 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.666039 B = 5210.234151 C = 5546.086427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 N -0.380 5.380 4 C 0.057 3.943 5 C -0.195 4.195 6 C -0.055 4.055 7 C 0.449 3.551 8 O -0.583 6.583 9 N -0.454 5.454 10 C 0.114 3.886 11 C -0.303 4.303 12 H 0.095 0.905 13 C 0.029 3.971 14 N -0.887 5.887 15 Si 0.925 3.075 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.062 3.938 20 N -0.305 5.305 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.167 0.833 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.266 0.734 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -12.328 -5.774 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.164 5.164 4 C -0.088 4.088 5 C -0.206 4.206 6 C -0.097 4.097 7 C 0.237 3.763 8 O -0.467 6.467 9 N -0.174 5.174 10 C -0.030 4.030 11 C -0.431 4.431 12 H 0.113 0.887 13 C -0.174 4.174 14 N -0.527 5.527 15 Si 0.752 3.248 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.124 4.124 20 N -0.126 5.126 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.184 0.816 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.022 -12.968 -6.475 14.495 hybrid contribution 0.375 1.004 1.426 1.784 sum 0.397 -11.964 -5.049 12.992 Atomic orbital electron populations 1.22052 0.94132 1.02316 1.03830 1.21542 0.95911 0.78059 1.03076 1.48454 1.36237 1.09854 1.21815 1.22154 0.95955 0.95053 0.95668 1.19602 1.07091 0.94103 0.99852 1.19890 0.96599 0.96315 0.96875 1.20133 0.87902 0.84441 0.83803 1.90514 1.16788 1.68111 1.71311 1.43610 1.08668 1.34123 1.30959 1.21482 0.81906 0.97066 1.02548 1.19583 1.08868 1.00287 1.14360 0.88676 1.25299 0.97177 0.95697 0.99188 1.69987 1.29588 1.14284 1.38817 0.86023 0.79375 0.77903 0.81512 1.20065 1.21016 1.19914 1.23677 0.95211 0.96996 0.96539 1.77176 1.23784 0.97208 1.14467 0.91203 0.91146 0.91887 0.90367 0.89071 0.81595 0.90176 0.89639 0.92520 0.91512 0.95524 0.92377 0.80510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.10 37.15 0.38 -1.35 16 2 C 0.14 1.44 7.23 -4.04 -0.03 1.42 16 3 N -0.38 -5.87 3.68 -61.37 -0.23 -6.10 16 4 C 0.06 0.92 11.36 -17.22 -0.20 0.72 16 5 C -0.19 -3.54 4.59 -105.05 -0.48 -4.02 16 6 C -0.06 -1.02 4.71 -29.03 -0.14 -1.16 16 7 C 0.45 11.08 7.62 -10.98 -0.08 11.00 16 8 O -0.58 -16.63 15.73 5.55 0.09 -16.54 16 9 N -0.45 -11.78 3.02 -122.19 -0.37 -12.15 16 10 C 0.11 2.54 8.52 59.85 0.51 3.05 16 11 C -0.30 -8.61 9.29 -14.93 -0.14 -8.75 16 12 H 0.10 2.84 7.41 -52.49 -0.39 2.45 16 13 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 14 N -0.89 -23.96 10.62 55.50 0.59 -23.37 16 15 Si 0.92 21.16 29.57 -169.99 -5.03 16.14 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 C 0.06 1.11 11.96 -17.36 -0.21 0.90 16 20 N -0.31 -5.40 12.42 30.62 0.38 -5.02 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.08 1.29 7.41 -51.93 -0.38 0.90 16 28 H 0.09 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.06 1.31 7.54 -51.93 -0.39 0.92 16 30 H 0.07 1.57 7.06 -51.93 -0.37 1.20 16 31 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 285.78 15.07 4.31 4.31 Total: -1.00 -34.06 285.78 -5.11 -39.17 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.37 Total: 1.09 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.48 Total: 2.48 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.37 Total: -46.63 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.06 -5.11 -39.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548360377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.003 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds